RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 SPATA2Q9UM82 520 aa12.12□□□□□ -0.47
SNRNP48-201ENST00000342415 GMEB1Q9Y692 573 aa12.12□□□□□ -0.47
SNRNP48-201ENST00000342415 TRIP11Q15643 1979 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 BLVRAP53004 296 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 HSPB3Q12988 150 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 GRB14Q14449 540 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ADGRF1Q5T601 910 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 KANK2Q63ZY3 851 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 NIPAL1Q6NVV3 410 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 DCDC5Q6ZRR9 648 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 CFAP206Q8IYR0 622 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 LGI4Q8N135 537 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 RNF175Q8N4F7 328 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 NDNFQ8TB73 568 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PROKR1Q8TCW9 393 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZFP90Q8TF47 636 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 HDAC2Q92769 488 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 KCNJ9Q92806 393 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 RPL3LQ92901 407 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 EXOSC8Q96B26 276 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 EGLN2Q96KS0 407 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF347Q96SE7 839 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF382Q96SR6 550 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PTPN18Q99952 460 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 MCMBPQ9BTE3 642 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TPT1P8Q9HAU6 139 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 MRPL17Q9NRX2 175 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 CRNNQ9UBG3 495 aaPredicted RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF221Q9UK13 617 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 GPR45Q9Y5Y3 372 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 STATHP02808 62 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PRPS2P11908 318 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PABPC1P11940 636 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PSMA1P25786 263 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 DNAJA1P31689 397 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF648Q5T619 568 aaPredicted RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 MFSD4BQ5TF39 518 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 RAET1GQ6H3X3 334 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 CCDC80Q76M96 950 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TRIM48Q8IWZ4 208 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 RAVER1Q8IY67 606 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SPARTQ8N0X7 666 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SLCO4A1Q96BD0 722 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SCLYQ96I15 445 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 FUBP3Q96I24 572 aaKnown RBP eCLIP12.11□□□□□ -0.471e-7■■■□□ 16.7
SNRNP48-201ENST00000342415 INPP5KQ9BT40 448 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SSR3Q9UNL2 185 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 A0A1B0GTL3 188 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 H0YJX3 145 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 MUSKO15146 869 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SLC28A2O43868 658 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PORP16435 677 aaPredicted RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF404Q494X3 552 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 CYBRD1Q53TN4 286 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 FRG2Q64ET8 278 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 FAM217AQ8IXS0 508 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SCAMP4Q969E2 229 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 UBXN10Q96LJ8 280 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PSKH2Q96QS6 385 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 FRG2BQ96QU4 278 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TIGARQ9NQ88 270 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 DUS2Q9NX74 493 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TVP23BQ9NYZ1 205 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 GJD2Q9UKL4 321 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 STX16O14662 325 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 RPLP0P05388 317 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 GJA5P36382 358 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TALDO1P37837 337 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 NSG1P42857 185 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 RPP38P78345 283 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 MEF2AQ02078 507 aaPredicted RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 SPCS2Q15005 226 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 MAMDC4Q6UXC1 1216 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TMPRSS11AQ6ZMR5 421 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ZZZ3Q8IYH5 903 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 FAM86B1Q8N7N1 296 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 ATOH8Q96SQ7 321 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 BARD1Q99728 777 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 TUBB1Q9H4B7 451 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 PAK1IP1Q9NWT1 392 aaPredicted RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 OSER1Q9NX31 292 aa12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 OAS3Q9Y6K5 1087 aaKnown RBP12.11□□□□□ -0.47
SNRNP48-201ENST00000342415 H0YAE9 185 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 CASKO14936 926 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 DCTP40126 519 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 RCAN2Q14206 197 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 GPAT3Q53EU6 434 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF697Q5TEC3 545 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 HACD2Q6Y1H2 254 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 KRT74Q7RTS7 529 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 SNX20Q7Z614 316 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 CLECL1Q8IZS7 167 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 CSGALNACT1Q8TDX6 532 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 BTN2A2Q8WVV5 523 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 ARMC5Q96C12 935 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 POLR2J2Q9GZM3 115 aaKnown RBP12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 SLC32A1Q9H598 525 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 ABCB8Q9NUT2 735 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 COMMD3Q9UBI1 195 aa12.1□□□□□ -0.47
SNRNP48-201ENST00000342415 ANGPT4Q9Y264 503 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms