RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PPP3R1P63098 170 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 RING1Q06587 406 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 SWI5Q1ZZU3 235 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 LRRC20Q8TCA0 184 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 RAD51AP1Q96B01 352 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 METTL2AQ96IZ6 378 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ANKRD60Q9BZ19 345 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 PIGVQ9NUD9 493 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 EXOSC1Q9Y3B2 195 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CLDN4O14493 209 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TBX1O43435 398 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 OR4F21O95013 312 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 SCRN3Q0VDG4 424 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CRTC2Q53ET0 693 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM135Q86UB9 458 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 KBTBD6Q86V97 674 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MGAT4BQ9UQ53 548 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MT-CYBP00156 380 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 DNAJA4Q8WW22 397 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 NPY6RQ99463 290 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MARCH7Q9H992 704 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MARK1Q9P0L2 795 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TMA7Q9Y2S6 64 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TTC3P53804 2025 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 FAM149AA5PLN7 773 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TBC1D3BA6NDS4 549 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MATN4O95460 622 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CAND1Q86VP6 1230 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TM6SF2Q9BZW4 377 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MAP4K5Q9Y4K4 846 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 RCBTB2O95199 551 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 PSKH1P11801 424 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 XKR4Q5GH76 650 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 SH3D19Q5HYK7 790 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ADGRF1Q5T601 910 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ADGRG2Q8IZP9 1017 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF527Q8NB42 609 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 RHBDF1Q96CC6 855 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC35G5Q96KT7 338 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 FEM1AQ9BSK4 669 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ZDHHC2Q9UIJ5 367 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 HCN4Q9Y3Q4 1203 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 KIAA1551Q9HCM1 1747 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 GSTT2P0CG29 244 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CSTF2P33240 577 aaKnown RBP eCLIP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CLCNKBP51801 687 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CTC1Q2NKJ3 1217 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 PLA2G4EQ3MJ16 856 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 KLHL24Q6TFL4 600 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TPGS1Q6ZTW0 290 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CPA6Q8N4T0 437 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 NDC1Q9BTX1 674 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 STK25O00506 426 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 CREG1O75629 220 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 IDSP22304 550 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 MAGEA11P43364 429 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 POU4F2Q12837 409 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM80Q96HE8 168 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 GPR88Q9GZN0 384 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ALPPP05187 535 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 GBX2P52951 348 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 DHRS4Q9BTZ2 278 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TPK1Q9H3S4 243 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 LRRC14BA6NHZ5 514 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 YJEFN3A6XGL0 299 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CHURC1-FNTBB4DL54 471 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CCRL2O00421 344 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 RETP07949 1114 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PRKAR2AP13861 404 aaKnown RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 MTPNP58546 118 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 NAE1Q13564 534 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TMCO2Q7Z6W1 182 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 SPATA22Q8NHS9 363 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PPP1R14AQ96A00 147 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 COL26A1Q96A83 441 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 OR52B2Q96RD2 323 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 NLE1Q9NVX2 485 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF358Q9NW07 568 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 AJAP1Q9UKB5 411 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ALDOAP04075 364 aaKnown RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PRKAG1P54619 331 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 NIPAL4Q0D2K0 466 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 REEP3Q6NUK4 255 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 RNF19BQ6ZMZ0 732 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC35A5Q9BS91 424 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 NLGN3Q9NZ94 848 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TIMM22Q9Y584 194 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TLR4O00206 839 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 APOL3O95236 402 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PIRTP0C851 137 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 SELPP16109 830 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ITPKAP23677 461 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 DGKGP49619 791 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ACTC1P68032 377 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ACTA1P68133 377 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 LIPJQ5W064 366 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 LINC00299Q6ZSB3 139 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ATCAYQ86WG3 371 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 L3HYPDHQ96EM0 354 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 DPAGT1Q9H3H5 408 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms