RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GPATCH11Q8N954 259 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 ZSCAN1Q8NBB4 408 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 SEC14L1Q92503 715 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 KIAA1143Q96AT1 154 aaPredicted RBP15.22■□□□□ 0.03
CLN3-201ENST00000333496 RUFY1Q96T51 708 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 MIPEPQ99797 713 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 FAM114A2Q9NRY5 505 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.22■□□□□ 0.03
CLN3-201ENST00000333496 ADAMTS6Q9UKP5 1117 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 CORO1CQ9ULV4 474 aaPredicted RBP15.22■□□□□ 0.03
CLN3-201ENST00000333496 VWA7Q9Y334 891 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 CXorf49A8MYA2 514 aaPredicted RBP15.21■□□□□ 0.03
CLN3-201ENST00000333496 ERVH48-1M5A8F1 160 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 ATXN7O15265 892 aaPredicted RBP15.21■□□□□ 0.03
CLN3-201ENST00000333496 NKX2-8O15522 239 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 ZBTB14O43829 449 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 TSPAN12O95859 305 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 TCN2P20062 427 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 RORAP35398 523 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 GRIA3P42263 894 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 ITGA1P56199 1179 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 GPX6P59796 221 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 CAV1Q03135 178 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 LCN10Q6JVE6 187 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 FAM45BPQ6NSW5 357 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 UBE2R2Q712K3 238 aaPredicted RBP15.21■□□□□ 0.03
CLN3-201ENST00000333496 STRA8Q7Z7C7 330 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 SLC26A11Q86WA9 606 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 PALM2Q8IXS6 379 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 LRRC56Q8IYG6 542 aaPredicted RBP15.21■□□□□ 0.03
CLN3-201ENST00000333496 PPFIBP2Q8ND30 876 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 OR2L3Q8NG85 312 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 FAM45AQ8TCE6 357 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 CT55Q8WUE5 264 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 ZNF480Q8WV37 535 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 LRFN5Q96NI6 719 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 PHACTR1Q9C0D0 580 aa15.21■□□□□ 0.03
CLN3-201ENST00000333496 SPRTNQ9H040 489 aaPredicted RBP15.21■□□□□ 0.03
CLN3-201ENST00000333496 E7EQ34 232 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 ZNF749O43361 778 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 NRP2O60462 931 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 CYP2A7P20853 494 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 PNLIPRP1P54315 467 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 COL9A2Q14055 689 aaPredicted RBP15.21■□□□□ 0.02
CLN3-201ENST00000333496 ARHGAP19Q14CB8 494 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 TMEM207Q6UWW9 146 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 DSELQ8IZU8 1212 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 STARD8Q92502 1023 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 ZUFSPQ96AP4 578 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 EFHD1Q9BUP0 239 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 ACAT2Q9BWD1 397 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 ACTR5Q9H9F9 607 aaPredicted RBP15.21■□□□□ 0.02
CLN3-201ENST00000333496 ZDHHC18Q9NUE0 388 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 PCMTD2Q9NV79 361 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 KLK4Q9Y5K2 254 aa15.21■□□□□ 0.02
CLN3-201ENST00000333496 TCRBV9S1A1TA0A576 114 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 ZNF891A8MT65 544 aaPredicted RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 TARM1B6A8C7 271 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 E7ENX8 843 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 MEN1O00255 615 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 OR2B3O76000 313 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 FKBP9O95302 570 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 SYF2O95926 243 aaKnown RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 RGS4P49798 205 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 TAP2Q03519 686 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 PDAP1Q13442 181 aaKnown RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 DNASE1L3Q13609 305 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 LINC00303Q3SY05 128 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 ZNF385CQ66K41 422 aaPredicted RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 LRRC8EQ6NSJ5 796 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 C3orf62Q6ZUJ4 267 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 CYS1Q717R9 158 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 CCDC25Q86WR0 208 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 SMPDL3AQ92484 453 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 N4BP2L2Q92802 583 aaPredicted RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 EXTL1Q92935 676 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 CLIP3Q96DZ5 547 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 LINGO1Q96FE5 620 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 INTS7Q9NVH2 962 aaKnown RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 EURLQ9NYK6 297 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 DMGDHQ9UI17 866 aaKnown RBP15.2■□□□□ 0.02
CLN3-201ENST00000333496 PLCL2Q9UPR0 1127 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 PDE10AQ9Y233 779 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 PCDHGA6Q9Y5G7 932 aa15.2■□□□□ 0.02
CLN3-201ENST00000333496 KALRNO60229 2985 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 FAM95CA0A1B0GW59 222 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 CTSVO60911 334 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 ERLIN1O75477 346 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 RHOXF2BP0C7M4 288 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 IMPA1P29218 277 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 MAGEA4P43358 317 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 ATP1A1-AS1Q5TC04 95 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 MCATQ8IVS2 390 aaKnown RBP15.19■□□□□ 0.02
CLN3-201ENST00000333496 GPR135Q8IZ08 494 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 MR1Q95460 341 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 RHOXF2Q9BQY4 288 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 PARD6BQ9BYG5 372 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 CHST8Q9H2A9 424 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 ANKZF1Q9H8Y5 726 aa15.19■□□□□ 0.02
CLN3-201ENST00000333496 LRRC4CQ9HCJ2 640 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms