RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NFIXQ14938 502 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 MON1BQ7L1V2 547 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SCGB1C1Q8TD33 95 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TMEM80Q96HE8 168 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TOR3AQ9H497 397 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 FAPQ12884 760 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SLC39A12Q504Y0 691 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SEZ6Q53EL9 994 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 TMEM214Q6NUQ4 689 aaKnown RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ACBD4Q8NC06 268 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 FAM46DQ8NEK8 389 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ZBTB26Q9HCK0 441 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 OXSMQ9NWU1 459 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ANKRD36CQ5JPF3 1778 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 RPS3P23396 243 aaKnown RBP eCLIP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 BDNFP23560 247 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 DLSTP36957 453 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ERMP1Q7Z2K6 904 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ELAC1Q9H777 363 aaKnown RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 NUDT7P0C024 238 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 HSD3B2P26439 372 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ACTBP60709 375 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ACTA2P62736 377 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ACTG1P63261 375 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ACTG2P63267 376 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 TRUB1Q8WWH5 349 aaKnown RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SPACA7Q96KW9 195 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 HSPE1-MOB4S4R3N1 261 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 RAB19A4D1S5 217 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 TLR4O00206 839 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 MPIP34949 423 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ARL14Q8N4G2 192 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SOCS4Q8WXH5 440 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SENP8Q96LD8 212 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 CYP2S1Q96SQ9 504 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ISM1B1AKI9 464 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 GABRDO14764 452 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ITPKBP27987 946 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 MSX2P35548 267 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ALDH3B2P48448 385 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 DNASE1L3Q13609 305 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 LIX1Q8N485 282 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 TAPBPLQ9BX59 468 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ABHD16BQ9H3Z7 469 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF334Q9HCZ1 680 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 FNIP2Q9P278 1114 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SLC1A5Q15758 541 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 CARTPTQ16568 116 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 TMCO2Q7Z6W1 182 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 MCEMP1Q8IX19 187 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 MEPEQ9NQ76 525 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 TCAF1Q9Y4C2 921 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 PKMP14618 531 aaKnown RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 RPIAP49247 311 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 PGAP1Q75T13 922 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF676Q8N7Q3 588 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 OR7G2Q8NG99 324 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF641Q96N77 438 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SLC29A3Q9BZD2 475 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 MTFR1LQ9H019 292 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 SPATC1LQ9H0A9 340 aa13.98□□□□□ -0.17
COL7A1-201ENST00000328333 HNRNPFP52597 415 aaKnown RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 BNIP3Q12983 259 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 UBAP2Q5T6F2 1119 aaKnown RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 DPY19L3Q6ZPD9 716 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 MKKSQ9NPJ1 570 aaPredicted RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 LRRTM2O43300 516 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 MATN4O95460 622 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 H1F0P07305 194 aaKnown RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 AKT2P31751 481 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 ARFRP1Q13795 201 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 BCL2A1Q16548 175 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 ZC3H12AQ5D1E8 599 aaKnown RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 SSX6Q7RTT6 188 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 SLC7A4O43246 635 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 TSPAN3O60637 253 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 PAK4O96013 591 aaPredicted RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 OR8D1Q8WZ84 308 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 EQTNQ9NQ60 294 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 BIN3Q9NQY0 253 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 FAM105AQ9NUU6 356 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 IFT52Q9Y366 437 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 A0A1W2PRQ8 180 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 ABL2P42684 1182 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 GBE1Q04446 702 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 ARSKQ6UWY0 536 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 HSPBAP1Q96EW2 488 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 MTG2Q9H4K7 406 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 EXOSC1Q9Y3B2 195 aaKnown RBP13.97□□□□□ -0.17
COL7A1-201ENST00000328333 TESMINQ9Y4I5 508 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 ATG12O94817 140 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 SOX9P48436 509 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 SCGB2B2Q4G0G5 96 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 NPNTQ6UXI9 565 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 NIPA2Q8N8Q9 360 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 OR10G2Q8NGC3 310 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 OR51D1Q8NGF3 324 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 NLGN3Q9NZ94 848 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 H7C417 338 aa13.97□□□□□ -0.17
COL7A1-201ENST00000328333 FMO3P31513 532 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms