RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PDIA5Q14554 519 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ACSBG2Q5FVE4 666 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 DENND1CQ8IV53 801 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 NIM1KQ8IY84 436 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF738Q8NE65 137 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 FCRL2Q96LA5 508 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 WNT8AQ9H1J5 351 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 C12orf10Q9HB07 376 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 NCKIPSDQ9NZQ3 722 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC22A14Q9Y267 594 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 FLT1P17948 1338 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CARMIL2Q6F5E8 1435 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 YEATS2Q9ULM3 1422 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ARVCFO00192 962 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 RTCAO00442 366 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GPR37O15354 613 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 AVILO75366 819 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 HSD11B1P28845 292 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 HOXA11P31270 313 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SNCAP37840 140 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 AMTP48728 403 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CDH12P55289 794 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TMEM69Q5SWH9 247 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 OVOS1Q6IE37 1185 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CHST9Q7L1S5 443 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GTPBP8Q8N3Z3 284 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 DAGLBQ8NCG7 672 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 BPIFCQ8NFQ6 507 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF668Q96K58 619 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF558Q96NG5 402 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ZIM3Q96PE6 472 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 FOXC2Q99958 501 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 C12orf65Q9H3J6 166 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 MID1IP1Q9NPA3 183 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TOPORSQ9NS56 1045 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CDH22Q9UJ99 828 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 MINPP1Q9UNW1 487 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM135AQ9P2D6 1515 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GLRA3O75311 464 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 DFFBO76075 338 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 OXSR1O95747 527 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GCGP01275 180 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 S100A7P31151 101 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TGFBR1P36897 503 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 RELQ04864 619 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 DUSP4Q13115 394 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 EXT1Q16394 746 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 NDUFA9Q16795 377 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 HYIQ5T013 277 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 RHBDD2Q6NTF9 364 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CPXM2Q8N436 756 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 C9orf43Q8TAL5 461 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM3CQ92520 227 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 PTERQ96BW5 349 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SFRP2Q96HF1 295 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 OR2M2Q96R28 347 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 FTHL17Q9BXU8 183 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ANKEF1Q9NU02 776 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CD300AQ9UGN4 299 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDHA8Q9Y5H6 950 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 LRRC10BA6NIK2 292 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TPST2O60704 377 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ANXA3P12429 323 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 AQP2P41181 271 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 MC3RP41968 323 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ITGA8P53708 1063 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 QPCTQ16769 361 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 PLEKHN1Q494U1 663 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 KLHL22Q53GT1 634 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TMPRSS11BQ86T26 416 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 COL23A1Q86Y22 540 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CADM2Q8N3J6 435 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 MAFAQ8NHW3 353 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 XAGE3Q8WTP9 111 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 UBTD2Q8WUN7 234 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 MOAP1Q96BY2 351 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SLCO1B3Q9NPD5 702 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 WDR7Q9Y4E6 1490 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 KDM5DQ9BY66 1539 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SMIM30A4D0T7 59 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 FBLL1A6NHQ2 334 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TRMUO75648 421 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 RHOBTB3O94955 611 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CTSHP09668 335 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TAS2R50P59544 299 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GAMTQ14353 236 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ARHGAP40Q5TG30 622 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GPR155Q7Z3F1 870 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 DHDDSQ86SQ9 333 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 NXPE1Q8N323 547 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ACBD7Q8N6N7 88 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GAB3Q8WWW8 586 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 NCSTNQ92542 709 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TATDN2Q93075 761 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SCRN2Q96FV2 425 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC39A13Q96H72 371 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ASB16Q96NS5 453 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 OR7D2Q96RA2 312 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 AGPAT1Q99943 283 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 GINS3Q9BRX5 216 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms