RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TMEM80Q96HE8 168 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 DDX4Q9NQI0 724 aaKnown RBP13.58□□□□□ -0.24
CSPG4-201ENST00000308508 TEX13DA0A0J9YY54 714 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 IQCF5A8MTL0 148 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ESR1P03372 595 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TAL1P17542 331 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 FAM129CQ86XR2 697 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TMEM126BQ8IUX1 230 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 C2orf73Q8N5S3 287 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TMBIM1Q969X1 311 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 GSKIPQ9P0R6 139 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 RABL2AQ9UBK7 228 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 RABL2BQ9UNT1 228 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 GOT2P00505 430 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 C1RP00736 705 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 PRPS1L1P21108 318 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 SSTP61278 116 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 SLC3A1Q07837 685 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 INTS6LQ5JSJ4 861 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 KCTD9Q7L273 389 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ZFPM1Q8IX07 1006 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 OR6K2Q8NGY2 324 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 FAM124BQ9H5Z6 455 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 NMUR1Q9HB89 426 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 SH2B3Q9UQQ2 575 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF598Q86UK7 904 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 OR14K1Q8NGZ2 314 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ASB15Q8WXK1 588 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ADAD1Q96M93 576 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 MAPKAP1Q9BPZ7 522 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 WASHC1A8K0Z3 465 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 WASH3PC4AMC7 463 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF670-ZNF695F2Z2N8 137 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 PDHXO00330 501 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 SEPT4O43236 478 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 CDK14O94921 469 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ALAS2P22557 587 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 UGT2B10P36537 528 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 CTBP2P56545 445 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 DUS1LQ6P1R4 473 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 LCLAT1Q6UWP7 414 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 WASH2PQ6VEQ5 465 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 IL4I1Q96RQ9 567 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 PTPRUQ92729 1446 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 H1F0P07305 194 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 SLC6A9P48067 706 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 DSC3Q14574 896 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 JAGN1Q8N5M9 183 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TTLQ8NG68 377 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 LMLNQ96KR4 655 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 CPA4Q9UI42 421 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3DA0A087WVF3 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3IA0A087WXS9 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3EA0A087X179 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3KA0A087X1G2 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3FA6NER0 549 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3LB9A6J9 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3HP0C7X1 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 NMBRP28336 390 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 MAGEA8P43361 318 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3GQ6DHY5 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3CQ6IPX1 549 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 GALNT13Q8IUC8 556 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D3Q8IZP1 549 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 FAM110BQ8TC76 370 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF641Q96N77 438 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 NECAB3Q96P71 396 aaPredicted RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 NELFAQ9H3P2 528 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 MFSD1Q9H3U5 465 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 HEBP2Q9Y5Z4 205 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 AFDNP55196 1824 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 TRAV6A0A075B6T7 132 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 RCBTB2O95199 551 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ADH1AP07327 375 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 PLPPR4Q7Z2D5 763 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 GPR151Q8TDV0 419 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 OR5B12Q96R08 314 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 SLC35A5Q9BS91 424 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 C12orf65Q9H3J6 166 aaKnown RBP13.57□□□□□ -0.24
CSPG4-201ENST00000308508 ENAMQ9NRM1 1142 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 NDUFAF4Q9P032 175 aa13.57□□□□□ -0.24
CSPG4-201ENST00000308508 NEDD8-MDP1E9PL57 170 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 NCBP2P52298 156 aaKnown RBP eCLIP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 ANKRD23Q86SG2 305 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 KCNN1Q92952 543 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 ARHGEF4Q9NR80 690 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SNX10Q9Y5X0 201 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SSX4O60224 188 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 RHOQP17081 205 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 KIF18BQ86Y91 864 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 PIAS4Q8N2W9 510 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 DRAXINQ8NBI3 349 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 OR5B17Q8NGF7 314 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 JOSD2Q8TAC2 188 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SHKBP1Q8TBC3 707 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 ISOC1Q96CN7 298 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 IGFLR1Q9H665 355 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 AMBNQ9NP70 447 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 NSG1P42857 185 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 TMBIM6P55061 237 aa13.56□□□□□ -0.24
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