RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZNF557Q8N988 423 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 XAGE5Q8WWM1 108 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 C5orf34Q96MH7 638 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 TCRBV7S3A2A0A539 114 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 CTPS1P17812 591 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 FAM174BQ3ZCQ3 159 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 UBQLN2Q9UHD9 624 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 LRRC42Q9Y546 428 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 DAPL1A0PJW8 107 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 EPCAMP16422 314 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 PRKCHP24723 683 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 TPRG1LQ5T0D9 272 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 FAM46CQ5VWP2 391 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 COQ8AQ8NI60 647 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 CREB3L1Q96BA8 519 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 DPEP3Q9H4B8 488 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 FARSBQ9NSD9 589 aaKnown RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 MAB21L2Q9Y586 359 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 PTPRJQ12913 1337 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 GPR25O00155 361 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 XKP51811 444 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 SH3PXD2AQ5TCZ1 1133 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 TIFABQ6ZNK6 161 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ATP6V1C2Q8NEY4 427 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 CCDC120Q96HB5 630 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 GATA5Q9BWX5 397 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 SMURF1Q9HCE7 757 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 CNTN3Q9P232 1028 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ABCA3Q99758 1704 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF536O15090 1300 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 HCAR3P49019 387 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 OXR1Q8N573 874 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 NETO2Q8NC67 525 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 OR10G6Q8NH81 332 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 SUSD6Q92537 303 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 SLC27A6Q9Y2P4 619 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 A0A1B0GVC2 190 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 A8MV72 311 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 MATN3O15232 486 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 KHKP50053 298 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 INCA1Q0VD86 236 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 EPGNQ6UW88 154 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 PAMR1Q6UXH9 720 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 TIGD4Q8IY51 512 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 KLHL36Q8N4N3 616 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 HIF3AQ9Y2N7 669 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 NHSQ6T4R5 1651 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 OAS1P00973 400 aaKnown RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 IRF9Q00978 393 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PACRGLQ8N7B6 248 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 EXOSC8Q96B26 276 aaKnown RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 MFSD3Q96ES6 412 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 KCNC2Q96PR1 638 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 FBXW11Q9UKB1 542 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PIKFYVEQ9Y2I7 2098 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 CLCA1A8K7I4 914 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 SPARCP09486 303 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 MC4RP32245 332 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 HERVK_113P63132 956 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PIWIL1Q96J94 861 aaKnown RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ERVK-6Q9BXR3 956 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 DPAGT1Q9H3H5 408 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 TAS2R3Q9NYW6 316 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 UNC13CQ8NB66 2214 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 A0A0G2JLL6 359 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ATG13O75143 517 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 SLC25A14O95258 325 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 CFHP08603 1231 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 RHOQP17081 205 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 HEPACAMQ14CZ8 416 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 GARNL3Q5VVW2 1013 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PRRT2Q7Z6L0 340 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF227Q86WZ6 799 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ARRDC4Q8NCT1 418 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 KAT2AQ92830 837 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 COQ10BQ9H8M1 238 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 RBM47A0AV96 593 aaKnown RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 IFNA21P01568 189 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ELFN1P0C7U0 828 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 CMPK2Q5EBM0 449 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 TMEM214Q6NUQ4 689 aaKnown RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 SLC30A8Q8IWU4 369 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 SCGB3A2Q96PL1 93 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ANKHQ9HCJ1 492 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 SPIN1Q9Y657 262 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ENTPD6O75354 484 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 APLP1P51693 650 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 C9orf64Q5T6V5 341 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PDSS2Q86YH6 399 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PHYKPLQ8IUZ5 450 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 LPGAT1Q92604 370 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 HSPA12BQ96MM6 686 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 TMED9Q9BVK6 235 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 FTHL17Q9BXU8 183 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 PRRG4Q9BZD6 226 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 CXCR3P49682 368 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 NCBP2-AS2Q69YL0 99 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF347Q96SE7 839 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 RGCCQ9H4X1 137 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms