RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KDM8Q8N371 416 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TSPYL6Q8N831 410 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ANKRD44Q8N8A2 993 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LARP4BQ92615 738 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FAHD2AQ96GK7 314 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 AMDHD1Q96NU7 426 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SLC9A7Q96T83 725 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 EBF2Q9HAK2 575 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 A8MXE2 369 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 AIPO00170 330 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 VNN2O95498 520 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ADRB1P08588 477 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NT5EP21589 574 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CD72P21854 359 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HOXA11P31270 313 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RPS9P46781 194 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HK3P52790 923 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HASPINQ8TF76 798 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CNOT8Q9UFF9 292 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 BTBD3Q9Y2F9 522 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DISP3Q9P2K9 1392 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FAM237AA0A1B0GTK4 181 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 G3V3G9 751 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SLC22A1O15245 554 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FOXN1O15353 648 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 GLRA3O75311 464 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ADAP00813 363 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SRPRAP08240 638 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CASP3P42574 277 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NAGLUP54802 743 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KCNQ4P56696 695 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HNRNPA1L2Q32P51 320 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 BICRALQ6AI39 1079 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NADSYN1Q6IA69 706 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FAM124AQ86V42 546 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NLRP8Q86W28 1048 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 C10orf107Q8IVU9 208 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 POU5F2Q8N7G0 328 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TC2NQ8N9U0 490 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MFSD14AQ96MC6 490 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ISCA1Q9BUE6 129 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KAT8Q9H7Z6 458 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FKRPQ9H9S5 495 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KLHL9Q9P2J3 617 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PNMA8CA0A1B0GUJ8 204 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 AQP7O14520 342 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MATN3O15232 486 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MED26O95402 600 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NSA2O95478 260 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CRYABP02511 175 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MSH3P20585 1137 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 METAP1P53582 386 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SRSF5Q13243 272 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TRADDQ15628 312 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 AANATQ16613 207 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SLC35F1Q5T1Q4 408 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DDI2Q5TDH0 399 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NCR3LG1Q68D85 454 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FSTL4Q6MZW2 842 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CCDC24Q8N4L8 307 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF680Q8NEM1 530 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZCCHC10Q8TBK6 192 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HTR3CQ8WXA8 447 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LGMNQ99538 433 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ECSITQ9BQ95 431 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ECHDC1Q9NTX5 307 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MIOSQ9NXC5 875 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SMPD4Q9NXE4 827 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FLRT1Q9NZU1 646 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SEC14L6B5MCN3 397 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RAB27BO00194 218 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CES2O00748 559 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CD8BP10966 210 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PIM1P11309 404 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 C1QBPQ07021 282 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LRRC32Q14392 662 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CRY2Q49AN0 593 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RBM48Q5RL73 367 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LRIF1Q5T3J3 769 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SNX29P2Q8IUI4 249 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MRPS31Q92665 395 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MARC2Q969Z3 335 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM169Q96HH4 297 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MCCC1Q96RQ3 725 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DDX4Q9NQI0 724 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SLC7A8Q9UHI5 535 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PPP2R2CQ9Y2T4 447 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MIA2Q96PC5 1412 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZDBF2Q9HCK1 2354 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PNMA6EA0A0J9YXQ4 647 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ANKRD61A6NGH8 418 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CD8B2A6NJW9 211 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 H0YIN7 160 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MEIS2O14770 477 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PFKFB2O60825 505 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 POMCP01189 267 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NR2F6P10588 404 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LAG3P18627 525 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TSPAN8P19075 237 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TGFBR2P37173 567 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms