RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DRP2Q13474 957 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TRA2AQ13595 282 aaKnown RBP eCLIP0.36□□□□□ -2.35
VPS35-212ENST00000640313 ITGA7Q13683 1181 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SQLEQ14534 574 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 NR1D2Q14995 579 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TNIP1Q15025 636 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 HERC3Q15034 1050 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 NECTIN1Q15223 517 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TEAD2Q15562 447 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 EXT1Q16394 746 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MEA1Q16626 185 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ITPRIPL2Q3MIP1 535 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 UGT3A2Q3SY77 523 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PDLIM3Q53GG5 364 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SYT14P1Q58G82 188 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MDH1BQ5I0G3 518 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ELFN2Q5R3F8 820 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PLEKHS1Q5SXH7 462 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 RNASEH2BQ5TBB1 312 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 CYP4A22Q5TCH4 519 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ARHGEF16Q5VV41 709 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 RSBN1Q5VWQ0 802 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SUSD4Q5VX71 490 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FAM205BPQ63HN1 556 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DHRS7BQ6IAN0 325 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMEM211Q6ICI0 200 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRR27Q6MZM9 219 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMEM154Q6P9G4 183 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SLC25A47Q6Q0C1 308 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CORO6Q6QEF8 472 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FIP1L1Q6UN15 594 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMEM207Q6UWW9 146 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 VITQ6UXI7 678 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMPRSS11FQ6ZWK6 438 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 INTS8Q75QN2 995 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 FASTKD5Q7L8L6 764 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 GSTA5Q7RTV2 222 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF554Q86TJ5 538 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SLC47A2Q86VL8 602 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 LACC1Q8IV20 430 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMEM139Q8IV31 216 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MMD2Q8IY49 270 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GPD1LQ8N335 351 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GUF1Q8N442 669 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 AFAP1Q8N556 730 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TTC39CQ8N584 583 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MINDY1Q8N5J2 469 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PAF1Q8N7H5 531 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 Q8NBF4 154 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMEM178AQ8NBL3 297 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 AQP11Q8NBQ7 271 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 KBTBD8Q8NFY9 601 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 OR10S1Q8NGN2 331 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 OR5M8Q8NGP6 311 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 OR10Q1Q8NGQ4 319 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF519Q8TB69 540 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SCFD2Q8WU76 684 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SMAP2Q8WU79 429 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 PHLDA1Q8WV24 401 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 UCMAQ8WVF2 138 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 APOBEC4Q8WW27 367 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 IRGQQ8WZA9 623 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PIGBQ92521 554 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SLCO2A1Q92959 643 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF622Q969S3 477 aaKnown RBP eCLIP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SLC22A18Q96BI1 424 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DHX58Q96C10 678 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SPDL1Q96EA4 605 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FAM120BQ96EK7 910 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 CCDC34Q96HJ3 373 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MPP4Q96JB8 637 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FAM81BQ96LP2 452 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 C10orf90Q96M02 699 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 C1orf147Q96MC9 270 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 FAM20AQ96MK3 541 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CMTM3Q96MX0 182 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF285Q96NJ3 590 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MUS81Q96NY9 551 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 NEK1Q96PY6 1258 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 KRT12Q99456 494 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CTRCQ99895 268 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FUCA2Q9BTY2 467 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 LMF2Q9BU23 707 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 PUS3Q9BZE2 481 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 OR2B2Q9GZK3 357 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 WWTR1Q9GZV5 400 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 S1PR5Q9H228 398 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CPVLQ9H3G5 476 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GHITMQ9H3K2 345 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 HRH4Q9H3N8 390 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 KCNK15Q9H427 330 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DENND2DQ9H6A0 471 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 TBC1D17Q9HA65 648 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GNB4Q9HAV0 340 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 EQTNQ9NQ60 294 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FGF21Q9NSA1 209 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 KRT84Q9NSB2 600 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DIAPH3Q9NSV4 1193 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 STAU2Q9NUL3 570 aaKnown RBP eCLIP0.36□□□□□ -2.35
VPS35-212ENST00000640313 BLOC1S4Q9NUP1 217 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms