RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 LATS2Q9NRM7 1088 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TRPS1Q9UHF7 1281 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PADI3Q9ULW8 664 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ERVW-1Q9UQF0 538 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ERGIC3Q9Y282 383 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 FNDC3AQ9Y2H6 1198 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHGA11Q9Y5H2 935 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 GMPPBQ9Y5P6 360 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 AP1M2Q9Y6Q5 423 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MTCL1Q9Y4B5 1905 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 C9JVG2 144 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CDC7O00311 574 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RGS10O43665 173 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KDELR3O43731 214 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SGTAO43765 313 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KLK8O60259 260 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MGEA5O60502 916 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RSL1D1O76021 490 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ATE1O95260 518 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 GNAO1P09471 354 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 HAPLN1P10915 354 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ITGAMP11215 1152 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 IL1RNP18510 177 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PSMB9P28065 219 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CD52P31358 61 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SOX11P35716 441 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ZFP36L2P47974 494 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OR4D2P58180 307 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RHOAP61586 193 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 AP1S1P61966 158 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TUBA1BP68363 451 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ECT2LQ008S8 904 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ABHD18Q0P651 414 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 GTF2H3Q13889 308 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SEMA3AQ14563 771 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 NDUFA5Q16718 116 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TIMM50Q3ZCQ8 353 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PRAMEF19Q5SWL8 479 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ANKRD26P1Q6NSI1 321 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KIAA1841Q6NSI8 718 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TUBA3EQ6PEY2 450 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SLC2A7Q6PXP3 512 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TUBA1AQ71U36 451 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 R3HCC1LQ7Z5L2 792 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TRIM69Q86WT6 500 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PHYKPLQ8IUZ5 450 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 AMER2Q8N7J2 671 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SIDT2Q8NBJ9 832 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RIBC2Q9H4K1 309 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 IPPKQ9H8X2 491 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 REEP1Q9H902 201 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 FAM118AQ9NWS6 357 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 C1orf109Q9NX04 203 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KLQ9UEF7 1012 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DUSP12Q9UNI6 340 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TMED5Q9Y3A6 229 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KCTD3Q9Y597 815 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TTC3P53804 2025 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 A0A096LPI6 279 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 LOC100130705A0A1B0GUX0 176 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 A0A1B0GVM2 712 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 LINC00854A0A1B0GVQ3 168 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 FUOMA2VDF0 154 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MYO1GB0I1T2 1018 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM189-UBE2V1I3L0A0 370 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TLR5O60602 858 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CNTN5O94779 1100 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OAZ2O95190 189 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 EPN2O95208 641 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SEC24AO95486 1093 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 NADKO95544 446 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 FGF19O95750 216 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 GLUD1P00367 558 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 IFNA14P01570 189 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ALPLP05186 524 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SYPP08247 313 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 EBLN1P0CF75 366 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF865P0CJ78 1059 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CBSLP0DN79 551 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SRFP11831 508 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CRHBPP24387 322 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 HOXC8P31273 242 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RYKP34925 604 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CBSP35520 551 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KRT20P35900 424 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TUFMP49411 452 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MTPNP58546 118 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CXCR4P61073 352 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OLR1P78380 273 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TFF2Q03403 129 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RELAQ04206 551 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 LRRC74AQ0VAA2 488 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TAF10Q12962 218 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TRAF3Q13114 568 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 VEPH1Q14D04 833 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TGFBIQ15582 683 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CDKL4Q5MAI5 379 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ALG1LQ6GMV1 187 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms