RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 MAP3K3Q99759 626 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 EGFL8Q99944 293 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 ROPN1BQ9BZX4 212 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 ROPN1Q9HAT0 212 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 C1GALT1Q9NS00 363 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 IGSF5Q9NSI5 407 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 STOX2Q9P2F5 926 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 RNF112Q9ULX5 631 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 WASF3Q9UPY6 502 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 PLAAQ9Y263 795 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 A0A0J9YY10 115 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 CCDC189A1A4V9 331 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 MAP3K7O43318 606 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 KLHL2O95198 593 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 FKBP9O95302 570 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 GUCA1CO95843 209 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 MT-ND3P03897 115 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 S100BP04271 92 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 COL6A2P12110 1019 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 KRT15P19012 456 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 IMPA1P29218 277 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 GMPRP36959 345 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 SEPHS1P49903 392 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 CDKL1Q00532 357 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 DLG1Q12959 904 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 C16orf72Q14CZ0 275 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 PPP1R3AQ16821 1122 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 MBOAT1Q6ZNC8 495 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 KMT5CQ86Y97 462 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 CENPLQ8N0S6 344 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 FBXO39Q8N4B4 442 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 LMNTD1Q8N9Z9 388 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 STAG3L4Q8TBR4 150 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 FBXL8Q96CD0 374 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 OR2A14Q96R47 310 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 TWSG1Q9GZX9 223 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 ZNF768Q9H5H4 540 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 ALG9Q9H6U8 611 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 MSRB2Q9Y3D2 182 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 LOXL2Q9Y4K0 774 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 PCDHB11Q9Y5F2 797 aa18.46■□□□□ 0.55
SQSTM1-216ENST00000626660 ACACBO00763 2458 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 E7ENX8 843 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 AGRPO00253 132 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 RFPL1O75677 317 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 ZBTB11O95625 1053 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 ANXA5P08758 320 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 JMJD7P0C870 316 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 PEBP1P30086 187 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 SHC2P98077 582 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 TAP2Q03519 686 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 FASTKQ14296 549 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 ACAP2Q15057 778 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 SF1Q15637 639 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 TSNAXIP1Q2TAA8 658 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 C3orf38Q5JPI3 329 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 THEMIS2Q5TEJ8 643 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 FOXR1Q6PIV2 292 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 AGTRAPQ6RW13 159 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 TRIM73Q86UV7 250 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 ACMSDQ8TDX5 336 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 KLHL6Q8WZ60 621 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 PTERQ96BW5 349 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 PITPNM3Q9BZ71 974 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 CCDC177Q9NQR7 707 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 PCMTD2Q9NV79 361 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 INTS7Q9NVH2 962 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 SOHLH2Q9NX45 425 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 SEMA5BQ9P283 1151 aa18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 TPRP12270 2363 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-216ENST00000626660 IGHV5-51A0A0C4DH38 117 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 PLD2O14939 933 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 CCNDBP1O95273 360 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 CCND1P24385 295 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 HNMTP50135 292 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 TGFBIQ15582 683 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 OR4D1Q15615 310 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 TMTC4Q5T4D3 741 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 SUSD1Q6UWL2 747 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 FAM129CQ86XR2 697 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 PPFIBP2Q8ND30 876 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 HNRNPLLQ8WVV9 542 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 EXT2Q93063 718 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 MED8Q96G25 268 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 PPM1MQ96MI6 270 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 NRSN2Q9GZP1 204 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 POLR1BQ9H9Y6 1135 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 ABCF3Q9NUQ8 709 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 ARGLU1Q9NWB6 273 aaPredicted RBP18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 CD274Q9NZQ7 290 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 SATB2Q9UPW6 733 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 CEP295Q9C0D2 2601 aa18.44■□□□□ 0.54
SQSTM1-216ENST00000626660 A0A1W2PPV9 198 aa18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 SLC9B1P1A6NJY1 282 aa18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 EFCAB7A8K855 629 aa18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 SYCE1LA8MT33 242 aa18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 PRICKLE3O43900 615 aaPredicted RBP18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 KERAO60938 352 aa18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 NELFEP18615 380 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-216ENST00000626660 CMPK1P30085 196 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms