RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 NDUFS3O75489 264 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 TPBGLP0DKB5 382 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 MAGP20916 626 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 ALAS2P22557 587 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 GNLYP22749 145 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 RPS3P23396 243 aaKnown RBP eCLIP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 MMP11P24347 488 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 SF1Q15637 639 aaKnown RBP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 DEFB110Q30KQ9 67 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 C1orf189Q5VU69 101 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 MRNIPQ6NTE8 343 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF534Q76KX8 674 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 SDCCAG8Q86SQ7 713 aaPredicted RBP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 MCATQ8IVS2 390 aaKnown RBP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 RBMXL3Q8N7X1 1067 aaKnown RBP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 HMGCLL1Q8TB92 370 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 TCF12Q99081 682 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 DHCR7Q9UBM7 475 aaKnown RBP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 SLC2A6Q9UGQ3 507 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 GUCA1BQ9UMX6 200 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 CDYLQ9Y232 598 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 KLK4Q9Y5K2 254 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 UTP20O75691 2785 aaKnown RBP11.45□□□□□ -0.58
UPF3B-204ENST00000619445 TEX15Q9BXT5 2789 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 ATP5DP30049 168 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 PEBP1P30086 187 aaKnown RBP11.44□□□□□ -0.58
UPF3B-204ENST00000619445 CSE1LP55060 971 aaKnown RBP11.44□□□□□ -0.58
UPF3B-204ENST00000619445 SARNPP82979 210 aaKnown RBP11.44□□□□□ -0.58
UPF3B-204ENST00000619445 FIGLAQ6QHK4 219 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 TTLL10Q6ZVT0 673 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 OVCH1Q7RTY7 1134 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 LMNTD1Q8N9Z9 388 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 LINC01555Q8NAE3 123 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 CFAP61Q8NHU2 1237 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 C1orf54Q8WWF1 131 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 NRTNQ99748 197 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 SELENOSQ9BQE4 189 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 MENTQ9BUN1 341 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 ILKAPQ9H0C8 392 aaPredicted RBP11.44□□□□□ -0.58
UPF3B-204ENST00000619445 CHRAC1Q9NRG0 131 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 UTP6Q9NYH9 597 aaKnown RBP11.44□□□□□ -0.58
UPF3B-204ENST00000619445 SPATA7Q9P0W8 599 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 MAP10Q9P2G4 905 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 PLAGL1Q9UM63 463 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 DOCK10Q96BY6 2186 aa11.44□□□□□ -0.58
UPF3B-204ENST00000619445 FITM1A5D6W6 292 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF839A8K0R7 811 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 CYSRT1A8MQ03 144 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 PCDH17O14917 1159 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 PAMP19021 973 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 HSD17B2P37059 387 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 GCGRP47871 477 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 UQCRFS1P47985 274 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 CARSP49589 748 aaKnown RBP11.43□□□□□ -0.58
UPF3B-204ENST00000619445 ADARP55265 1226 aaKnown RBP11.43□□□□□ -0.58
UPF3B-204ENST00000619445 ELOAQ14241 798 aaKnown RBP11.43□□□□□ -0.58
UPF3B-204ENST00000619445 MEI1Q5TIA1 1274 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 FAM69BQ5VUD6 431 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 PRMT9Q6P2P2 845 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 NAPRTQ6XQN6 538 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 GSTA5Q7RTV2 222 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 PPP1R32Q7Z5V6 425 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 Q8NA96 180 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 SKA2Q8WVK7 121 aaPredicted RBP11.43□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF778Q96MU6 729 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF285Q96NJ3 590 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 MFRPQ9BY79 579 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 P2RY12Q9H244 342 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 FAM114A2Q9NRY5 505 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 AGPAT4Q9NRZ5 378 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 SEMA3GQ9NS98 782 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 TREX1Q9NSU2 369 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 CUTCQ9NTM9 273 aa11.43□□□□□ -0.58
UPF3B-204ENST00000619445 TTC7AQ9ULT0 858 aaPredicted RBP11.43□□□□□ -0.58
UPF3B-204ENST00000619445 TCP11X1B4DZS4 312 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 PRPF4O43172 522 aaKnown RBP eCLIP11.42□□□□□ -0.58
UPF3B-204ENST00000619445 HCRTR1O43613 425 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 C1orf105O95561 183 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 ESR1P03372 595 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 UMODP07911 640 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 TPSB2P20231 275 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 RPL22P35268 128 aaKnown RBP11.42□□□□□ -0.58
UPF3B-204ENST00000619445 GRIA1P42261 906 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 EMP3P54852 163 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 SESN2P58004 480 aaPredicted RBP11.42□□□□□ -0.58
UPF3B-204ENST00000619445 BASP1P80723 227 aaKnown RBP11.42□□□□□ -0.58
UPF3B-204ENST00000619445 SNX1Q13596 522 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 GRB7Q14451 532 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 ARHGAP19Q14CB8 494 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 TPSAB1Q15661 275 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 C4orf17Q53FE4 359 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 AGAP7PQ5VUJ5 663 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 PRAMEF13Q5VWM6 474 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF662Q6ZS27 426 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 Q6ZS92 163 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 VRK3Q8IV63 474 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 OTUD6BQ8N6M0 293 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 PPP4R1Q8TF05 950 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 AGAP4Q96P64 663 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 KIFC1Q9BW19 673 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms