RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 GABARAPL2P60520 117 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 RPP38P78345 283 aaKnown RBP12.86□□□□□ -0.35
MSH6-214ENST00000616033 GBX1Q14549 363 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 CCDC85BQ15834 202 aaPredicted RBP12.86□□□□□ -0.35
MSH6-214ENST00000616033 LRRTM3Q86VH5 581 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 GALNT13Q8IUC8 556 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 RNF175Q8N4F7 328 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 CLDN19Q8N6F1 224 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 TOP6BLQ8N6T0 577 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 GTF2H4Q92759 462 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 YIPF6Q96EC8 236 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 TRNT1Q96Q11 434 aaKnown RBP12.86□□□□□ -0.35
MSH6-214ENST00000616033 FYTTD1Q96QD9 318 aaKnown RBP12.86□□□□□ -0.35
MSH6-214ENST00000616033 CPNE5Q9HCH3 593 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 LATS2Q9NRM7 1088 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 TOR4AQ9NXH8 423 aa12.86□□□□□ -0.35
MSH6-214ENST00000616033 AGO1Q9UL18 857 aaKnown RBP12.86□□□□□ -0.35
MSH6-214ENST00000616033 PCDHGA12O60330 932 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 OPN1SWP03999 348 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 HOXD8P13378 290 aaPredicted RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 GRK3P35626 688 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 BEX3Q00994 111 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 SF1Q15637 639 aaKnown RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 ZMAT1Q5H9K5 638 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 PIK3R6Q5UE93 754 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 EFL1Q7Z2Z2 1120 aaKnown RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 SVOPLQ8N434 492 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 BEND7Q8N7W2 519 aaPredicted RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 ATP6V0D2Q8N8Y2 350 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 DPF3Q92784 378 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 TXNDC15Q96J42 360 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 EGLN2Q96KS0 407 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 EBPLQ9BY08 206 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 LTBP3Q9NS15 1303 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 MMP2P08253 660 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 CTSKP43235 329 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 NKX3-2P78367 333 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 IRAK1BP1Q5VVH5 260 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 VANGL1Q8TAA9 524 aaPredicted RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 PHF10Q8WUB8 498 aaKnown RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 ZSCAN5AQ9BUG6 496 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 ITPAQ9BY32 194 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 RAD18Q9NS91 495 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 THG1LQ9NWX6 298 aaKnown RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 ZNF490Q9ULM2 529 aaPredicted RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 DERAQ9Y315 318 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 PCDHGB6Q9Y5F9 930 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 ZNF646O15015 1829 aaPredicted RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 H3BM21 787 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 MC4RP32245 332 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 GJA5P36382 358 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 CDKN2CP42773 168 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 TUBA1BP68363 451 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 ARHGEF7Q14155 803 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 ALKAL1Q6UXT8 129 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 TUBA1AQ71U36 451 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 BHLHA9Q7RTU4 235 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 GOLGA7Q7Z5G4 137 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 UBE2Q1Q7Z7E8 422 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 SLC44A2Q8IWA5 706 aaPredicted RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 SPPL2AQ8TCT8 520 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 IGSF8Q969P0 613 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 WWOXQ9NZC7 414 aa12.85□□□□□ -0.35
MSH6-214ENST00000616033 NUFIP1Q9UHK0 495 aaKnown RBP12.85□□□□□ -0.35
MSH6-214ENST00000616033 LCTP09848 1927 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 A0A0D9SEW6 157 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 RAMP2O60895 175 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 GPR32O75388 356 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 CNMDO75829 334 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 RPS17P08708 135 aaKnown RBP12.84□□□□□ -0.35
MSH6-214ENST00000616033 SMIM10L2AP0DMW4 78 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 SMIM10L2BP0DMW5 78 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 CYP2C18P33260 490 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 SLC14A1Q13336 389 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 GTF2H2Q13888 395 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 GTF2H2CQ6P1K8 395 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 SDR16C5Q8N3Y7 309 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 OR7D4Q8NG98 312 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 PYURFQ96I23 114 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 E2F3O00716 465 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 KMOO15229 486 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 THP07101 528 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 SMPD1P17405 629 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 SSTR4P31391 388 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 SLC26A3P40879 764 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 VLDLRP98155 873 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 NFKB2Q00653 900 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 TWF1Q12792 350 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 ACOX1Q15067 660 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 PLEKHG6Q3KR16 790 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 ARMCX4Q5H9R4 360 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 CPZQ66K79 652 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 OR5H6Q8NGV6 325 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 ISG20Q96AZ6 181 aaKnown RBP12.84□□□□□ -0.35
MSH6-214ENST00000616033 BTN2A3PQ96KV6 586 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 CNPPD1Q9BV87 410 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 BTBD2Q9BX70 525 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 BRINP2Q9C0B6 783 aa12.84□□□□□ -0.35
MSH6-214ENST00000616033 MRM3Q9HC36 420 aaKnown RBP12.84□□□□□ -0.35
MSH6-214ENST00000616033 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms