RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 HLA-EP13747 358 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 JUPP14923 745 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 ITGB7P26010 798 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 NEK2P51955 445 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 TMEM115Q12893 351 aaPredicted RBP19.15■□□□□ 0.66
CLIP3-206ENST00000593074 NHSL2Q5HYW2 709 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 C9orf64Q5T6V5 341 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 GLYATQ6IB77 296 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 CYP2U1Q7Z449 544 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 GPR149Q86SP6 731 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 MSRB3Q8IXL7 192 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 KLHDC8AQ8IYD2 350 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 TMIEQ8NEW7 156 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 OR8D1Q8WZ84 308 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 NSMCE2Q96MF7 247 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 ZNF583Q96ND8 569 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 NKX2-4Q9H2Z4 354 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 C8orf4Q9NR00 106 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 SLC25A37Q9NYZ2 338 aa19.15■□□□□ 0.66
CLIP3-206ENST00000593074 TRBV5-3A0A0A0MS03 114 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 ARHGAP10A1A4S6 786 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 GGT1P19440 569 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 MAP4P27816 1152 aaKnown RBP19.14■□□□□ 0.65
CLIP3-206ENST00000593074 MAPK1P28482 360 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 MAPK9P45984 424 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 METAP1P53582 386 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 ZNF33BQ06732 778 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 CHIT1Q13231 466 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 ATP6AP1Q15904 470 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 ZNF658BQ4V348 819 aaPredicted RBP19.14■□□□□ 0.65
CLIP3-206ENST00000593074 LIPJQ5W064 366 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 TANGO2Q6ICL3 276 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 CBR4Q8N4T8 237 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 DNAJB8Q8NHS0 232 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 CLHC1Q8NHS4 586 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 WRAP53Q9BUR4 548 aaKnown RBP19.14■□□□□ 0.65
CLIP3-206ENST00000593074 C9orf16Q9BUW7 83 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 HPS4Q9NQG7 708 aa19.14■□□□□ 0.65
CLIP3-206ENST00000593074 SOD1P00441 154 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 CDH1P12830 882 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 SOX11P35716 441 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 MAGEA10P43363 369 aaPredicted RBP19.13■□□□□ 0.65
CLIP3-206ENST00000593074 PLIN5Q00G26 463 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 NLRP8Q86W28 1048 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 SLC22A15Q8IZD6 547 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 ATL1Q8WXF7 558 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 FCRL1Q96LA6 429 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 OR52E6Q96RD3 313 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 PBX4Q9BYU1 374 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 ANKRD60Q9BZ19 345 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 EPHX3Q9H6B9 360 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 FAM8A1Q9UBU6 413 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 MAN2B2Q9Y2E5 1009 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 DLGAP1O14490 977 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 PABPC4LP0CB38 370 aaKnown RBP19.13■□□□□ 0.65
CLIP3-206ENST00000593074 SDC1P18827 310 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 FCARP24071 287 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 HALP42357 657 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 PREPP48147 710 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 CYP4F3Q08477 520 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 TMTC4Q5T4D3 741 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 PPP2R2DQ66LE6 453 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 SPRED1Q7Z699 444 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 LILRA3Q8N6C8 439 aaPredicted RBP19.13■□□□□ 0.65
CLIP3-206ENST00000593074 ZNF548Q8NEK5 533 aaPredicted RBP19.13■□□□□ 0.65
CLIP3-206ENST00000593074 TESCQ96BS2 214 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 CCDC138Q96M89 665 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 HHIPQ96QV1 700 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 IKZF5Q9H5V7 419 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 STOX2Q9P2F5 926 aaPredicted RBP19.13■□□□□ 0.65
CLIP3-206ENST00000593074 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.13■□□□□ 0.65
CLIP3-206ENST00000593074 SUFUQ9UMX1 484 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 OAZ3Q9UMX2 235 aa19.13■□□□□ 0.65
CLIP3-206ENST00000593074 TCF20Q9UGU0 1960 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 TBC1D3BA6NDS4 549 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ACOX3O15254 700 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 CATP04040 527 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 C7P10643 843 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 AMD1P17707 334 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 CD22P20273 847 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 POLE2P56282 527 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 PHC1P78364 1004 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 PCDH1Q08174 1060 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ABRQ12979 859 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 CSTF3Q12996 717 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ZNF234Q14588 700 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 RUNDC3AQ59EK9 446 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 LRIF1Q5T3J3 769 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 THOC6Q86W42 341 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 OR2T12Q8NG77 320 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ARRDC3Q96B67 414 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 APIPQ96GX9 242 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 SH3GL1Q99961 368 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 MRPS26Q9BYN8 205 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 AP3M1Q9Y2T2 418 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ERN1O75460 977 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 RASAL1O95294 804 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ANXA6P08133 673 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 TACR1P25103 407 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 COL4A3Q01955 1670 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms