RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 IRGCQ6NXR0 463 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 WDR74Q6RFH5 385 aaPredicted RBP13.18□□□□□ -0.3
VMP1-210ENST00000589823 CDHR3Q6ZTQ4 885 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 TAX1BP1Q86VP1 789 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 ADGRF3Q8IZF5 1079 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 FBXO39Q8N4B4 442 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 LMNTD1Q8N9Z9 388 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 LINC01555Q8NAE3 123 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 PDPRQ8NCN5 879 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 PPFIBP2Q8ND30 876 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 RHBDF1Q96CC6 855 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 MED8Q96G25 268 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 SH3GL2Q99962 352 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 RAB33BQ9H082 229 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 ATG10Q9H0Y0 220 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 CNOT10Q9H9A5 744 aaKnown RBP13.18□□□□□ -0.3
VMP1-210ENST00000589823 SSU72Q9NP77 194 aaKnown RBP13.18□□□□□ -0.3
VMP1-210ENST00000589823 CCDC177Q9NQR7 707 aaPredicted RBP13.18□□□□□ -0.3
VMP1-210ENST00000589823 TOR4AQ9NXH8 423 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 ACTR10Q9NZ32 417 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 EPHA6Q9UF33 1036 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 MID2Q9UJV3 735 aa13.18□□□□□ -0.3
VMP1-210ENST00000589823 ATXN7L1Q9ULK2 861 aaPredicted RBP13.18□□□□□ -0.3
VMP1-210ENST00000589823 A0A1W2PQM1 296 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 E7ENX8 843 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 NTN3O00634 580 aaPredicted RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 GIPC1O14908 333 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 CAPN5O15484 640 aaPredicted RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 PLIN3O60664 434 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 IPO13O94829 963 aaKnown RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 PROCP04070 461 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 CREB1P16220 341 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 OAS2P29728 719 aaKnown RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 MAGOHP61326 146 aaKnown RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 TBPL1P62380 186 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 TAP2Q03519 686 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 PFKFB4Q16877 469 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 CAPN13Q6MZZ7 669 aaPredicted RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 TMEM71Q6P5X7 295 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 SUSD1Q6UWL2 747 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 ARL8AQ96BM9 186 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 TLCD1Q96CP7 247 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 ATP6V1G3Q96LB4 118 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 TGM7Q96PF1 710 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 NUDT22Q9BRQ3 303 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 KCNK9Q9NPC2 374 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 ABCF3Q9NUQ8 709 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 SPHK1Q9NYA1 384 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 PTBP2Q9UKA9 531 aaKnown RBP13.17□□□□□ -0.3
VMP1-210ENST00000589823 POMT2Q9UKY4 750 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 PLLPQ9Y342 182 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 PCDHB11Q9Y5F2 797 aa13.17□□□□□ -0.3
VMP1-210ENST00000589823 DCDC2BA2VCK2 349 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 HMGB1P1B2RPK0 211 aaPredicted RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 D6RAR5 112 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 TYROBPO43914 113 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 CCNDBP1O95273 360 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 MYL2P10916 166 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 MTHFD2P13995 350 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 ATP5F1P24539 256 aaPredicted RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 PRDX3P30048 256 aaKnown RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 CSF2RBP32927 897 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 HSPA7P48741 367 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 ALDH18A1P54886 795 aaKnown RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 GFERP55789 205 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 SF1Q15637 639 aaKnown RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 PTCHD3Q3KNS1 767 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 PRAMEF13Q5VWM6 474 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 SPESP1Q6UW49 350 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 DHRS13Q6UX07 377 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 RBM44Q6ZP01 1051 aaKnown RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 RAB44Q7Z6P3 723 aaPredicted RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 SLCO6A1Q86UG4 719 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 OR4D9Q8NGE8 314 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 OR56A3Q8NH54 315 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 RDH11Q8TC12 318 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 TCP10LQ8TDR4 215 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 PYCR2Q96C36 320 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 PHF21BQ96EK2 531 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 CD180Q99467 661 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 MIPEPQ99797 713 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 ACAT2Q9BWD1 397 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 PCBD2Q9H0N5 130 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 DLL3Q9NYJ7 618 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 KLHL3Q9UH77 587 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 EMCNQ9ULC0 261 aa13.16□□□□□ -0.3
VMP1-210ENST00000589823 TNPO3Q9Y5L0 923 aaKnown RBP13.16□□□□□ -0.3
VMP1-210ENST00000589823 MN1Q10571 1320 aaPredicted RBP13.15□□□□□ -0.3
VMP1-210ENST00000589823 A0A1W2PPV9 198 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 A8MT66 165 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 TARM1B6A8C7 271 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 CASC3O15234 703 aaKnown RBP13.15□□□□□ -0.3
VMP1-210ENST00000589823 TM9SF1O15321 606 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 TAPBPO15533 448 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 PRPF4O43172 522 aaKnown RBP eCLIP13.15□□□□□ -0.3
VMP1-210ENST00000589823 KLK8O60259 260 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 CCNT2O60583 730 aaKnown RBP13.15□□□□□ -0.3
VMP1-210ENST00000589823 STK16O75716 305 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 RASSF9O75901 435 aa13.15□□□□□ -0.3
VMP1-210ENST00000589823 WDR47O94967 919 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms