RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF541Q9H0D2 1346 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 LOC105371242A0A075B767 164 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 MEX3AA1L020 520 aaKnown RBP2.4□□□□□ -2.03
VPS35-207ENST00000568191 ANKUB1A6NFN9 424 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 TFECO14948 347 aaPredicted RBP2.4□□□□□ -2.03
VPS35-207ENST00000568191 ZWINTO95229 277 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 WDPCPO95876 746 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 IGHEP01854 428 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 HSPA8P11142 646 aaKnown RBP2.4□□□□□ -2.03
VPS35-207ENST00000568191 ITIH1P19827 911 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 CYP2A7P20853 494 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 SAT1P21673 171 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 ACSL1P33121 698 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 CAPGP40121 348 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 SLC15A1P46059 708 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 ZNF75DP51815 510 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 PNLIPRP2P54317 469 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 NAP1L1P55209 391 aaKnown RBP2.4□□□□□ -2.03
VPS35-207ENST00000568191 GUCY2DQ02846 1103 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 PAX8Q06710 450 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 CXCL9Q07325 125 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 COX10Q12887 443 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 CALCOCO2Q13137 446 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 SGCGQ13326 291 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 SQLEQ14534 574 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 SLC25A47Q6Q0C1 308 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 Q6ZR54 194 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 FBXO39Q8N4B4 442 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 LINC00612Q8N6U2 182 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 Q8NBF4 154 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 NPEPL1Q8NDH3 523 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 DHX58Q96C10 678 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 C10orf90Q96M02 699 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 NECTIN4Q96NY8 510 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 MS4A10Q96PG2 267 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 PUS3Q9BZE2 481 aaKnown RBP2.4□□□□□ -2.03
VPS35-207ENST00000568191 NYXQ9GZU5 481 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 OSER1Q9NX31 292 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 GPR83Q9NYM4 423 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 DAPK2Q9UIK4 370 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 PLAGL1Q9UM63 463 aa2.4□□□□□ -2.03
VPS35-207ENST00000568191 AGAP14A8MT82 685 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 HEPACAM2A8MVW5 462 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 CTDSP2O14595 271 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 MEIS2O14770 477 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 VILLO15195 856 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 ERAL1O75616 437 aaKnown RBP2.39□□□□□ -2.03
VPS35-207ENST00000568191 TSPAN9O75954 239 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 SEC24AO95486 1093 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 IGKV3-15P01624 115 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 DNAH10OSP0CZ25 163 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 THEGLP0DJG4 465 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 CDC25CP30307 473 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 PTGER4P35408 488 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 GEMIN4P57678 1058 aaKnown RBP2.39□□□□□ -2.03
VPS35-207ENST00000568191 MYL7Q01449 175 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 KLC1Q07866 573 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 EFTUD2Q15029 972 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS35-207ENST00000568191 RAB41Q5JT25 222 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 PLEKHS1Q5SXH7 462 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 KRT79Q5XKE5 535 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 ZER1Q7Z7L7 766 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 RPAP2Q8IXW5 612 aaPredicted RBP2.39□□□□□ -2.03
VPS35-207ENST00000568191 POM121L12Q8N7R1 296 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 OR5T2Q8NGG2 359 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 ZPLD1Q8TCW7 415 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 LRRC15Q8TF66 581 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 SSMEM1Q8WWF3 244 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 TOMM40LQ969M1 308 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 SLAMF9Q96A28 289 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 THOC1Q96FV9 657 aaKnown RBP2.39□□□□□ -2.03
VPS35-207ENST00000568191 ZNF486Q96H40 463 aaPredicted RBP2.39□□□□□ -2.03
VPS35-207ENST00000568191 SFXN2Q96NB2 322 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 SEPHS2Q99611 448 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 WNT5BQ9H1J7 359 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 PPIL3Q9H2H8 161 aaKnown RBP2.39□□□□□ -2.03
VPS35-207ENST00000568191 ZHX3Q9H4I2 956 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 BLOC1S4Q9NUP1 217 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 STUB1Q9UNE7 303 aa2.39□□□□□ -2.03
VPS35-207ENST00000568191 EPM2AB3EWF7 344 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 ZBED4O75132 1171 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 BAIAP3O94812 1187 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 RXRGP48443 463 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 ALDH3A2P51648 485 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 LBX1P52954 281 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 B3GALT5-AS1P59052 145 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 HERC3Q15034 1050 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 PHKG1Q16816 387 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 PHLDA2Q53GA4 152 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 IGSF11Q5DX21 431 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 FRRS1Q6ZNA5 592 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 Q6ZRP5 223 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 CDHR3Q6ZTQ4 885 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 BTN2A1Q7KYR7 527 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 MARCH9Q86YJ5 346 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 NDUFAF2Q8N183 169 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 FBXL16Q8N461 479 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 TEX19Q8NA77 164 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 OR1L3Q8NH93 324 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 MIPOL1Q8TD10 442 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms