RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 PCLAFQ15004 111 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PPP1R3AQ16821 1122 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 DEFB133Q30KQ1 61 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 HSP90B2PQ58FF3 399 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 WDR45BQ5MNZ6 344 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PLEKHS1Q5SXH7 462 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 LGSNQ5TDP6 509 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 LRFN4Q6PJG9 635 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 LVRNQ6Q4G3 990 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 TBC1D1Q86TI0 1168 aaPredicted RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 AMZ2Q86W34 360 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PARGQ86W56 976 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 GATAD2AQ86YP4 633 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 C10orf107Q8IVU9 208 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 MYO1HQ8N1T3 1032 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 OXR1Q8N573 874 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 C2orf73Q8N5S3 287 aaPredicted RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 MFSD2AQ8NA29 543 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PPFIBP2Q8ND30 876 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 ZNF548Q8NEK5 533 aaPredicted RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 OR2L2Q8NH16 312 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 HM13Q8TCT9 377 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 DENND1AQ8TEH3 1009 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 INPP5DQ92835 1189 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PHF21BQ96EK2 531 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 TSPAN17Q96FV3 270 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 UBXN10Q96LJ8 280 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 LINC00615Q96LM1 132 aaPredicted RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 C12orf66Q96MD2 445 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PANX3Q96QZ0 392 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 ATOH8Q96SQ7 321 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 HGH1Q9BTY7 390 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 GTPBP2Q9BX10 602 aaKnown RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 SHCBP1LQ9BZQ2 653 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 ZDHHC5Q9C0B5 715 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PCED1AQ9H1Q7 454 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 OR52A5Q9H2C5 316 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 ARRDC1-AS1Q9H2J1 176 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 RABEP2Q9H5N1 569 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 XKR8Q9H6D3 395 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 NMRAL1Q9HBL8 299 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 POPDC3Q9HBV1 291 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 MED4Q9NPJ6 270 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 RXFP3Q9NSD7 469 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 ABCF3Q9NUQ8 709 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 IMP3Q9NV31 184 aaKnown RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 KCTD5Q9NXV2 234 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 TAAR2Q9P1P5 351 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 SIRPGQ9P1W8 387 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PILRBQ9UKJ0 227 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 SMG5Q9UPR3 1016 aaKnown RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 ANKRD6Q9Y2G4 727 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 TDRKHQ9Y2W6 561 aaKnown RBP5.08□□□□□ -1.6
SPG11-220ENST00000559933 ACOT9Q9Y305 439 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PLLPQ9Y342 182 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 PCDHGA2Q9Y5H1 932 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 HS3ST3A1Q9Y663 406 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 AK5Q9Y6K8 562 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 KNL1Q8NG31 2342 aa5.08□□□□□ -1.6
SPG11-220ENST00000559933 A0A1B0GTL3 188 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 A0A1B0GTW7 788 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 A6NCN8 305 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 A8MT66 165 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 TARM1B6A8C7 271 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 VILLO15195 856 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 NRP2O60462 931 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 DLX3O60479 287 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 MAGEC1O60732 1142 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 GLRA3O75311 464 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 LYPLA1O75608 230 aaPredicted RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 PIAS2O75928 621 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 SLCO2B1O94956 709 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 EPN2O95208 641 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 SIX3O95343 332 aaPredicted RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 TNFP01375 233 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 CSF2P04141 144 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 HOXC4P09017 264 aaPredicted RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 GSTM1P09488 218 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 SLC35G4P0C7Q5 338 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 MTHFD2P13995 350 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 NME1P15531 152 aaKnown RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 BGNP21810 368 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 DGKAP23743 735 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 HTR1BP28222 390 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 ACADLP28330 430 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 ATP5DP30049 168 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 ALDH3A1P30838 453 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 ARRB2P32121 409 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 CRHR1P34998 444 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 MPLP40238 635 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 CTSKP43235 329 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 IL2P60568 153 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 YPEL5P62699 121 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 YBX1P67809 324 aaKnown RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 ILF3Q12906 894 aaKnown RBP eCLIP5.07□□□□□ -1.6
SPG11-220ENST00000559933 PTK2BQ14289 1009 aa5.07□□□□□ -1.6
SPG11-220ENST00000559933 FASTKQ14296 549 aaKnown RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 SF3A2Q15428 464 aaKnown RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 ZXDCQ2QGD7 858 aaPredicted RBP5.07□□□□□ -1.6
SPG11-220ENST00000559933 ZNF528Q3MIS6 628 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms