RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PRAMEF11O60813 436 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 ULK1O75385 1050 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 GABARAPO95166 117 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 GJB5O95377 273 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 CYBAP13498 195 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 ACPPP15309 386 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 RPL17P18621 184 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 CTGFP29279 349 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 OR1E2P47887 323 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 GATMP50440 423 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 TUBA3CQ13748 450 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 HIST2H2ACQ16777 129 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 TYSND1Q2T9J0 566 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 FAM171A1Q5VUB5 890 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 AFTPHQ6ULP2 937 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 ZNF621Q6ZSS3 439 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 MON1AQ86VX9 555 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 DYNC2LI1Q8TCX1 351 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 DNASE1L2Q92874 299 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 REXO5Q96IC2 774 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 KCNS3Q9BQ31 491 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 SLIRPQ9GZT3 109 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 OR51E2Q9H255 320 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 TRMT13Q9NUP7 481 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 TMEM184CQ9NVA4 438 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 NLE1Q9NVX2 485 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 ERVK13-1Q9NX77 482 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 SNX6Q9UNH7 406 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 NOX1Q9Y5S8 564 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 TFECO14948 347 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 SLC25A14O95258 325 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 BCKDHAP12694 445 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 HOXC8P31273 242 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ST13P50502 369 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 ZNF135P52742 658 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 IL10RBQ08334 325 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 DUSP4Q13115 394 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 COQ5Q5HYK3 327 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 CPZQ66K79 652 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ADNP2Q6IQ32 1131 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 CHPFQ8IZ52 775 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 CLECL1Q8IZS7 167 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 NKAPQ8N5F7 415 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 LEMD2Q8NC56 503 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 WBP2Q969T9 261 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ZNF382Q96SR6 550 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ZIC5Q96T25 663 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 GPR63Q9BZJ6 419 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 WDR12Q9GZL7 423 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 TP63Q9H3D4 680 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 KAT8Q9H7Z6 458 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 ACOT13Q9NPJ3 140 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 MBD1Q9UIS9 605 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 ERVK-11Q9UQG0 969 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 PCDHGA3Q9Y5H0 932 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 HAS3O00219 553 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 MFN2O95140 757 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ITIH1P19827 911 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 OGNP20774 298 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 TACR2P21452 398 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ITPKAP23677 461 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 CPT1AP50416 773 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 RACK1P63244 317 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 PURAQ00577 322 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 CBX2Q14781 532 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 KIAA0040Q15053 153 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 RUNDC3AQ59EK9 446 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 IRAK1BP1Q5VVH5 260 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 KLHL17Q6TDP4 642 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 DPP10Q8N608 796 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 UTP15Q8TED0 518 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 FOXJ1Q92949 421 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 BTN2A3PQ96KV6 586 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 ZNF300Q96RE9 604 aaPredicted RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 TRIB3Q96RU7 358 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 YTHDF1Q9BYJ9 559 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 LRTM1Q9HBL6 345 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 RAD18Q9NS91 495 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 DCAF13Q9NV06 445 aaKnown RBP12.03□□□□□ -0.48
LDLR-205ENST00000557933 GPR83Q9NYM4 423 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 TESMINQ9Y4I5 508 aa12.03□□□□□ -0.48
LDLR-205ENST00000557933 MYO7AQ13402 2215 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 TYW5A2RUC4 315 aaKnown RBP12.02□□□□□ -0.48
LDLR-205ENST00000557933 RGS10O43665 173 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 MTX2O75431 263 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 LPOP22079 712 aaPredicted RBP12.02□□□□□ -0.48
LDLR-205ENST00000557933 GJA8P48165 433 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 SLC35A2P78381 396 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 DAB2P98082 770 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 CDC42EP1Q00587 391 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 SP3Q02447 781 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.02□□□□□ -0.48
LDLR-205ENST00000557933 HORMAD1Q86X24 394 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 TEX26Q8N6G2 289 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 ATP6V0D2Q8N8Y2 350 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 OR5K1Q8NHB7 308 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 PXYLP1Q8TE99 480 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 ATL1Q8WXF7 558 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 TMEM121BQ9BXQ6 578 aaPredicted RBP12.02□□□□□ -0.48
LDLR-205ENST00000557933 NUSAP1Q9BXS6 441 aaKnown RBP12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms