RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 DLG1Q12959 904 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 SYTL1Q8IYJ3 562 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 SLC41A2Q96JW4 573 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 TRAPPC9Q96Q05 1148 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 CTRCQ99895 268 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 ACAT2Q9BWD1 397 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 ASCL3Q9NQ33 180 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 ARL15Q9NXU5 204 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 STOX2Q9P2F5 926 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-225ENST00000556798 CTNNAL1Q9UBT7 734 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 KLHL20Q9Y2M5 609 aa16.88■□□□□ 0.29
SHMT2-225ENST00000556798 MDC1Q14676 2089 aaKnown RBP16.88■□□□□ 0.29
SHMT2-225ENST00000556798 FREM2Q5SZK8 3169 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 A0A096LPK6 155 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 PABPN1LA6NDY0 278 aaKnown RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 TRIM49D1C9J1S8 452 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 PRICKLE3O43900 615 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 KRT38O76015 456 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 ZBTB11O95625 1053 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 C2P06681 752 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 HIST1H2AGP0C0S8 130 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 HIST1H2ADP20671 130 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 TYK2P29597 1187 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 OAS2P29728 719 aaKnown RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 CSRP3P50461 194 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 YBX1P67809 324 aaKnown RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 FOXM1Q08050 763 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 ARHGAP19Q14CB8 494 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 SF1Q15637 639 aaKnown RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 PPP1R3AQ16821 1122 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 SLC5A12Q1EHB4 618 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 EMBQ6PCB8 327 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 TBC1D1Q86TI0 1168 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 KCTD4Q8WVF5 259 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 SMPDL3AQ92484 453 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 USP7Q93009 1102 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 PTERQ96BW5 349 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 RNF31Q96EP0 1072 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 HIST1H2AHQ96KK5 128 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 UBXN10Q96LJ8 280 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 CCDC138Q96M89 665 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 SLC46A1Q96NT5 459 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 HIST1H2AJQ99878 128 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 H2AFJQ9BTM1 129 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 ATG10Q9H0Y0 220 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 CCDC86Q9H6F5 360 aaKnown RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 APMAPQ9HDC9 416 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 IGSF5Q9NSI5 407 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 SLC39A1Q9NY26 324 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-225ENST00000556798 RAB21Q9UL25 225 aa16.87■□□□□ 0.29
SHMT2-225ENST00000556798 B4E171 279 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 C9orf172C9J069 976 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 E7ENX8 843 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 ENO2P09104 434 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 FOLR1P15328 257 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 MAGP20916 626 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 RPA3P35244 121 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 HSD17B2P37059 387 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TSPAN7P41732 249 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TBPL1P62380 186 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 HSD11B2P80365 405 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TAP2Q03519 686 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 OR4D1Q15615 310 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TAF1BQ53T94 588 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 KIAA1614Q5VZ46 1190 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 ADGRD1Q6QNK2 874 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 AGTRAPQ6RW13 159 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 FRA10AC1Q70Z53 315 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 ADAMTSL2Q86TH1 951 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 KMT5CQ86Y97 462 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 LRRC56Q8IYG6 542 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 CENPLQ8N0S6 344 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 CARFQ8N187 725 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 C19orf47Q8N9M1 422 aaKnown RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 ANKRD7Q92527 254 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 CAVIN3Q969G5 261 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 SLC22A18Q96BI1 424 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 ALKBH8Q96BT7 664 aaKnown RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 OR6C1Q96RD1 312 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 MIPEPQ99797 713 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TRIM54Q9BYV2 358 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 VPS11Q9H270 941 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 FOXJ2Q9P0K8 574 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TAC3Q9UHF0 121 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 TLK1Q9UKI8 766 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 NOVA2Q9UNW9 492 aaKnown RBP16.86■□□□□ 0.29
SHMT2-225ENST00000556798 BTRCQ9Y297 605 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 ACOT9Q9Y305 439 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 APC2O95996 2303 aa16.86■□□□□ 0.29
SHMT2-225ENST00000556798 A0A087X1B8 175 aa16.85■□□□□ 0.29
SHMT2-225ENST00000556798 SMIM23A6NLE4 172 aa16.85■□□□□ 0.29
SHMT2-225ENST00000556798 ZNF839A8K0R7 811 aa16.85■□□□□ 0.29
SHMT2-225ENST00000556798 CDRT15L2A8MXV6 281 aa16.85■□□□□ 0.29
SHMT2-225ENST00000556798 KRT37O76014 449 aa16.85■□□□□ 0.29
SHMT2-225ENST00000556798 DXOO77932 396 aaKnown RBP16.85■□□□□ 0.29
SHMT2-225ENST00000556798 SNRPAP09012 282 aaKnown RBP16.85■□□□□ 0.29
SHMT2-225ENST00000556798 LTA4HP09960 611 aaKnown RBP16.85■□□□□ 0.29
SHMT2-225ENST00000556798 CNTFP26441 200 aa16.85■□□□□ 0.29
SHMT2-225ENST00000556798 MLLT3P42568 568 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms