RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PRLHRP49683 370 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 KPNA2P52292 529 aaKnown RBP9.68□□□□□ -0.86
SCFD1-220ENST00000556486 XIAPP98170 497 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 BBS9Q3SYG4 887 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 ZNF789Q5FWF6 425 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 CRB2Q5IJ48 1285 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 FAM209AQ5JX71 171 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 TMTC4Q5T4D3 741 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 DUS1LQ6P1R4 473 aaKnown RBP9.68□□□□□ -0.86
SCFD1-220ENST00000556486 MED25Q71SY5 747 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 CNGA4Q8IV77 575 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 RCOR2Q8IZ40 523 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 DSELQ8IZU8 1212 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 SLC25A41Q8N5S1 370 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 GLIS1Q8NBF1 620 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 ST6GALNAC3Q8NDV1 305 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 IPMKQ8NFU5 416 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 HM13Q8TCT9 377 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 HEXDCQ8WVB3 486 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 RBM41Q96IZ5 413 aaKnown RBP9.68□□□□□ -0.86
SCFD1-220ENST00000556486 RMDN2Q96LZ7 410 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 CLUHP3Q96NS8 147 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 CCM2Q9BSQ5 444 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 FSD1LQ9BXM9 530 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 NLNQ9BYT8 704 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 KLHL25Q9H0H3 589 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 WWP1Q9H0M0 922 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 ARNT2Q9HBZ2 717 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 COPG2Q9UBF2 871 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 MAPRE3Q9UPY8 281 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 HEBP2Q9Y5Z4 205 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 COLEC10Q9Y6Z7 277 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 SVILO95425 2214 aa9.68□□□□□ -0.86
SCFD1-220ENST00000556486 ELOA3CA0A087WX78 387 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ELOA3DA6NLF2 546 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 TMEM150CB9EJG8 249 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 E2F3O00716 465 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ZNF189O75820 626 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 KLK3P07288 261 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 GSTM1P09488 218 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 PBLDP30039 288 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 AKT1P31749 480 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 PTPN7P35236 360 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 CD151P48509 253 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 GEMP55040 296 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 RRADP55042 308 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 PER3P56645 1201 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 SRSF11Q05519 484 aaKnown RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 SLC9A5Q14940 896 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ELOA3BQ3SY89 546 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 GPR33Q49SQ1 333 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ITPRIPL1Q6GPH6 555 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 C11orf63Q6NUN7 778 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 MRGPREQ86SM8 312 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 KCNMB4Q86W47 210 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 SYTL1Q8IYJ3 562 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 NXPE1Q8N323 547 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 GALNT16Q8N428 558 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ACVR1CQ8NER5 493 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ELOA3Q8NG57 546 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 GRHL3Q8TE85 626 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 NAT14Q8WUY8 206 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 CPT1BQ92523 772 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ULK4Q96C45 1275 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 CNDP1Q96KN2 507 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 DHRS1Q96LJ7 313 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 C12orf66Q96MD2 445 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 PPP1R2P1Q96PQ5 205 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 NRTNQ99748 197 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 DPH2Q9BQC3 489 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 WNT10AQ9GZT5 417 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 CHRNA10Q9GZZ6 450 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 TFB2MQ9H5Q4 396 aaKnown RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ASB8Q9H765 288 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 RSPH14Q9UHP6 348 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 FEZ2Q9UHY8 353 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 AAR2Q9Y312 384 aaKnown RBP9.67□□□□□ -0.86
SCFD1-220ENST00000556486 HYOU1Q9Y4L1 999 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 ARL5AQ9Y689 179 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 FER1L5A0AVI2 2057 aa9.67□□□□□ -0.86
SCFD1-220ENST00000556486 MTORP42345 2549 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 POLEQ07864 2286 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 TRBV23-1A0A0A0MS06 115 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 TRAV20A0A0B4J274 112 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 TRBV5-4A0A0C4DH59 114 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 OR6C74A6NCV1 312 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 H7C0S8 307 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 BUD23O43709 281 aaKnown RBP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 CRTAMO95727 393 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 AGTP01019 485 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 RALBP11234 206 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 NAT2P11245 290 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 PSMA3P25788 255 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 HADHAP40939 763 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ZNF140P52738 457 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 KRTAP10-9P60411 292 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ETF1P62495 437 aaKnown RBP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 PRKAA1Q13131 559 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 RPA4Q13156 261 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 TBX2Q13207 712 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms