RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 VPS26BQ4G0F5 336 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 PAGE3Q5JUK9 113 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 CYP20A1Q6UW02 462 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 CFAP206Q8IYR0 622 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 HIST1H2AHQ96KK5 128 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 MRGPRX1Q96LB2 322 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 PPP3R2Q96LZ3 170 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 CDRT15Q96T59 188 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 HBEGFQ99075 208 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 HIST1H2AJQ99878 128 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 H2AFJQ9BTM1 129 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 S100A14Q9HCY8 104 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 FBXL12Q9NXK8 326 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 NOP53Q9NZM5 478 aaKnown RBP8.64□□□□□ -1.03
TDP1-210ENST00000554976 TSC22D4Q9Y3Q8 395 aa8.64□□□□□ -1.03
TDP1-210ENST00000554976 PRORSD1PA6NEY8 169 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 FFAR3O14843 346 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 GPR42O15529 346 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 CRCPO75575 148 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 RNASEH2AO75792 299 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 BCAS2O75934 225 aaPredicted RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 NPPBP16860 134 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 ITPKAP23677 461 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 PBLDP30039 288 aaPredicted RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 AP5B1Q2VPB7 878 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 SLCO4C1Q6ZQN7 724 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 ARHGAP22Q7Z5H3 698 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 LRRTM4Q86VH4 590 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 TRIM69Q86WT6 500 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 RIMKLAQ8IXN7 391 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.63□□□□□ -1.03
TDP1-210ENST00000554976 NUDT8Q8WV74 236 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 ATL1Q8WXF7 558 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 MSANTD3Q96H12 275 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 MRPL1Q9BYD6 325 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 ATG10Q9H0Y0 220 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 CLMPQ9H6B4 373 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 SIRT5Q9NXA8 310 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 KLQ9UEF7 1012 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 NDUFAF1Q9Y375 327 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 POLR3HQ9Y535 204 aaPredicted RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 FANCMQ8IYD8 2048 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 C9JVG2 144 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 NR5A2O00482 541 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 TRIM38O00635 465 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 NME4O00746 187 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 RGS14O43566 566 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 SYNCRIPO60506 623 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 SLC22A3O75751 556 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 KLHL18O94889 574 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 CATP04040 527 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 NDUFV2P19404 249 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 HMOX2P30519 316 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 POLR2JP52435 117 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 HNRNPFP52597 415 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 STX1BP61266 288 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 CSTF3Q12996 717 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 RCN1Q15293 331 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 PLA2G4EQ3MJ16 856 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 CRTC3Q6UUV7 619 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 DLEU7Q6UYE1 221 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 HORMAD1Q86X24 394 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 CACUL1Q86Y37 369 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 TRAPPC5Q8IUR0 188 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 LAS2Q8IYD9 372 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 FNDC5Q8NAU1 212 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 PPFIBP2Q8ND30 876 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 ASB9Q96DX5 294 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 UHRF1Q96T88 793 aaPredicted RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 SLC17A9Q9BYT1 436 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 USP36Q9P275 1121 aaKnown RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 PNMA8BQ9ULN7 279 aaPredicted RBP8.63□□□□□ -1.03
TDP1-210ENST00000554976 PRKAB1Q9Y478 270 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 OR1A2Q9Y585 309 aa8.63□□□□□ -1.03
TDP1-210ENST00000554976 TRBV5-3A0A0A0MS03 114 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 A0A1W2PPV9 198 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 A0A1W2PQU0 124 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 ULK1O75385 1050 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 C8BP07358 591 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 ANPEPP15144 967 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 AMD1P17707 334 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 SLC6A2P23975 617 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 NME5P56597 212 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 TBPL1P62380 186 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 RAE1P78406 368 aaKnown RBP8.62□□□□□ -1.03
TDP1-210ENST00000554976 HMGCS1Q01581 520 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 TAP2Q03519 686 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 FZD5Q13467 585 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 GTF2H3Q13889 308 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 DOC2AQ14183 400 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 MLF2Q15773 248 aaPredicted RBP8.62□□□□□ -1.03
TDP1-210ENST00000554976 CYP2A13Q16696 494 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 KIF19Q2TAC6 998 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 C1orf146Q5VVC0 180 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 IL23RQ5VWK5 629 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 TRMT11Q7Z4G4 463 aaKnown RBP8.62□□□□□ -1.03
TDP1-210ENST00000554976 OR9A1PQ8NGU1 263 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 OR5K2Q8NHB8 316 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 JADE3Q92613 823 aa8.62□□□□□ -1.03
TDP1-210ENST00000554976 TMEM125Q96AQ2 219 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms