RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RAB15P59190 212 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 ILF2Q12905 390 aaKnown RBP13.62□□□□□ -0.23
PTCH1-226ENST00000553011 BMPR2Q13873 1038 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 GPR19Q15760 415 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 ZIC1Q15915 447 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 UAP1Q16222 522 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-226ENST00000553011 DCAF12Q5T6F0 453 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 TMEM164Q5U3C3 297 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 CEACAM20Q6UY09 585 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 MBOAT1Q6ZNC8 495 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 NKAPQ8N5F7 415 aaKnown RBP13.62□□□□□ -0.23
PTCH1-226ENST00000553011 PPFIBP2Q8ND30 876 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 HMGCLL1Q8TB92 370 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 ZNF480Q8WV37 535 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 TSPAN17Q96FV3 270 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 PDLIM5Q96HC4 596 aaKnown RBP13.62□□□□□ -0.23
PTCH1-226ENST00000553011 DCBLD2Q96PD2 775 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 SLC12A9Q9BXP2 914 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 TXLNGYQ9BZA5 131 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 GPAMQ9HCL2 828 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 KLHL20Q9Y2M5 609 aa13.62□□□□□ -0.23
PTCH1-226ENST00000553011 SRRM3A6NNA2 597 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 CDC7O00311 574 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 SLC16A5O15375 505 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 CYP2A7P20853 494 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 MAGP20916 626 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 IMPA1P29218 277 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 OAS2P29728 719 aaKnown RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 GMPRP36959 345 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 EIF2S3P41091 472 aaKnown RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 PMS2P54278 862 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 SP140Q13342 867 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 TUBB3Q13509 450 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 TSTA3Q13630 321 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 ARHGAP19Q14CB8 494 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 ZKSCAN8Q15776 578 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 SUSD1Q6UWL2 747 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 CMC1Q7Z7K0 106 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 C19orf47Q8N9M1 422 aaKnown RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 MCOLN3Q8TDD5 553 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 SMPDL3AQ92484 453 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 SLC22A18Q96BI1 424 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 TEFMQ96QE5 360 aaKnown RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 ACAT2Q9BWD1 397 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 ASPSCR1Q9BZE9 553 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 UNKQ9C0B0 810 aaKnown RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 B3GNT4Q9C0J1 378 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 PARVBQ9HBI1 364 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 POPDC3Q9HBV1 291 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 SYTL2Q9HCH5 934 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 FAM60AQ9NP50 221 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 PDE7BQ9NP56 450 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 FGF21Q9NSA1 209 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 ACSL6Q9UKU0 697 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 PCDHB11Q9Y5F2 797 aa13.61□□□□□ -0.23
PTCH1-226ENST00000553011 V9GYY5 206 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-226ENST00000553011 A0A087WUV0 522 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-226ENST00000553011 HMX2A2RU54 273 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 NPEPPSL1A6NEC2 478 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 E7ENX8 843 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 RIPK2O43353 540 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 TIAF1O95411 115 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 FGF5P12034 268 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 STMN1P16949 149 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 TNFRSF8P28908 595 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 RAB10P61026 200 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 YBX1P67809 324 aaKnown RBP13.6□□□□□ -0.23
PTCH1-226ENST00000553011 ACY1Q03154 408 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 TAP2Q03519 686 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 TGIF1Q15583 401 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 SF1Q15637 639 aaKnown RBP13.6□□□□□ -0.23
PTCH1-226ENST00000553011 DEFB110Q30KQ9 67 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 TMTC4Q5T4D3 741 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 MROH9Q5TGP6 573 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 KIAA1614Q5VZ46 1190 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 SBSNQ6UWP8 590 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 CDHR3Q6ZTQ4 885 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 TRMT10CQ7L0Y3 403 aaKnown RBP13.6□□□□□ -0.23
PTCH1-226ENST00000553011 SYTL1Q8IYJ3 562 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 SPATA6LQ8N4H0 392 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 EIF1ADQ8N9N8 165 aaKnown RBP13.6□□□□□ -0.23
PTCH1-226ENST00000553011 ZNF248Q8NDW4 579 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 OR2A1Q8NGT9 310 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 KCNE4Q8WWG9 221 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 SLC44A1Q8WWI5 657 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 CCDC138Q96M89 665 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 PAFAH2Q99487 392 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 MIPEPQ99797 713 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 ABCF3Q9NUQ8 709 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 CCDC88CQ9P219 2028 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 STOX2Q9P2F5 926 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-226ENST00000553011 RARRES3Q9UL19 164 aa13.6□□□□□ -0.23
PTCH1-226ENST00000553011 ZNF839A8K0R7 811 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 POC1B-GALNT4F8VUJ3 575 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 HCRTR1O43613 425 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 ABHD2P08910 425 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 CCDC166P0CW27 439 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 ZNF28P17035 718 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms