RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SUSD1Q6UWL2 747 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 TMEM151AQ8N4L1 468 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 HMGCLL1Q8TB92 370 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 TGM7Q96PF1 710 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 MRPL57Q9BQC6 102 aaKnown RBP20.5■□□□□ 0.87
VPS29-206ENST00000549578 ABCF3Q9NUQ8 709 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 MKS1Q9NXB0 559 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 ACTR10Q9NZ32 417 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 NUDT4Q9NZJ9 180 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 EMCNQ9ULC0 261 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 CCDC189A1A4V9 331 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 SYCE1LA8MT33 242 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 DKK1O94907 266 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 SBK3P0C264 359 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 SQSTM1Q13501 440 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 LRRC56Q8IYG6 542 aaPredicted RBP20.49■□□□□ 0.87
VPS29-206ENST00000549578 PDPRQ8NCN5 879 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 SMPDL3AQ92484 453 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 ARL8AQ96BM9 186 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 ALKBH8Q96BT7 664 aaKnown RBP20.49■□□□□ 0.87
VPS29-206ENST00000549578 RHBDF1Q96CC6 855 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 MED8Q96G25 268 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 TWSG1Q9GZX9 223 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 STMN4Q9H169 189 aaPredicted RBP20.49■□□□□ 0.87
VPS29-206ENST00000549578 KLHL3Q9UH77 587 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 DCHS1Q96JQ0 3298 aa20.49■□□□□ 0.87
VPS29-206ENST00000549578 A0A1W2PPV9 198 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 ZNF839A8K0R7 811 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 C2orf74A8MZ97 194 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 ISM1B1AKI9 464 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 D6RAR5 112 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 S100BP04271 92 aaPredicted RBP20.48■□□□□ 0.87
VPS29-206ENST00000549578 PSMB5P28074 263 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 TBPL1P62380 186 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 NAE1Q13564 534 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 WDR74Q6RFH5 385 aaPredicted RBP20.48■□□□□ 0.87
VPS29-206ENST00000549578 ZNF574Q6ZN55 896 aaPredicted RBP20.48■□□□□ 0.87
VPS29-206ENST00000549578 FAM92BQ6ZTR7 304 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 WDR48Q8TAF3 677 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 ATL1Q8WXF7 558 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 PYCR2Q96C36 320 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 PPM1MQ96MI6 270 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 GRID1Q9ULK0 1009 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 TARM1B6A8C7 271 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 GFAPP14136 432 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 UGT2B7P16662 529 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 HNMTP50135 292 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 KIR2DS3Q14952 304 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 PLXDC1Q8IUK5 500 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 FAM20CQ8IXL6 584 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 FLVCR1-AS1Q8TAF5 88 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 ESAMQ96AP7 390 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 OR2A14Q96R47 310 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 SH3GL2Q99962 352 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 TMEM79Q9BSE2 394 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 ACAT2Q9BWD1 397 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 RAB33BQ9H082 229 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 IQCGQ9H095 443 aaKnown RBP20.48■□□□□ 0.87
VPS29-206ENST00000549578 WWOXQ9NZC7 414 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 EPHA6Q9UF33 1036 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 POMT2Q9UKY4 750 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 ENTPD2Q9Y5L3 495 aa20.48■□□□□ 0.87
VPS29-206ENST00000549578 COL27A1Q8IZC6 1860 aaPredicted RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 TAPBPO15533 448 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 KIF1CO43896 1103 aaKnown RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 PRICKLE3O43900 615 aaPredicted RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 PLIN3O60664 434 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 PROCP04070 461 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 PRDX3P30048 256 aaKnown RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 HOXD11P31277 338 aaPredicted RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 MN1Q10571 1320 aaPredicted RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 PFKFB4Q16877 469 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 PTCHD3Q3KNS1 767 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 CDKL4Q5MAI5 379 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 SNAP47Q5SQN1 464 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 SULT1C3Q6IMI6 304 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 TMEM71Q6P5X7 295 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 TRIM73Q86UV7 250 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 FBXO39Q8N4B4 442 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 OR56A3Q8NH54 315 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 TLCD1Q96CP7 247 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 ZDHHC12Q96GR4 267 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 SEMA6CQ9H3T2 930 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 CCDC177Q9NQR7 707 aaPredicted RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 PTBP2Q9UKA9 531 aaKnown RBP20.47■□□□□ 0.87
VPS29-206ENST00000549578 PLLPQ9Y342 182 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 ACTL7BQ9Y614 415 aa20.47■□□□□ 0.87
VPS29-206ENST00000549578 MATN2O00339 956 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 DYNC1I1O14576 645 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 TYROBPO43914 113 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 C9P02748 559 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 CDK4P11802 303 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 OAS2P29728 719 aaKnown RBP20.46■□□□□ 0.87
VPS29-206ENST00000549578 RPA3P35244 121 aaPredicted RBP20.46■□□□□ 0.87
VPS29-206ENST00000549578 GDF5P43026 501 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 HSPA7P48741 367 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 AGTR2P50052 363 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 MAGOHP61326 146 aaKnown RBP20.46■□□□□ 0.87
VPS29-206ENST00000549578 YBX1P67809 324 aaKnown RBP20.46■□□□□ 0.87
VPS29-206ENST00000549578 CLPPQ16740 277 aaPredicted RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms