RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RHBDF1Q96CC6 855 aa16.56■□□□□ 0.24
LIG1-204ENST00000542460 APOPT1Q96IL0 206 aa16.56■□□□□ 0.24
LIG1-204ENST00000542460 NUDT22Q9BRQ3 303 aa16.56■□□□□ 0.24
LIG1-204ENST00000542460 NUDT4Q9NZJ9 180 aa16.56■□□□□ 0.24
LIG1-204ENST00000542460 XPR1Q9UBH6 696 aa16.56■□□□□ 0.24
LIG1-204ENST00000542460 ACTL7BQ9Y614 415 aa16.56■□□□□ 0.24
LIG1-204ENST00000542460 PCNX2A6NKB5 2137 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 ISM1B1AKI9 464 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 SUPT3HB4E1H0 165 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 D6RAR5 112 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 SUPT3HO75486 399 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 MTHFD2P13995 350 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 CSF2RBP32927 897 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 INSM1Q01101 510 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 N4BP2L1Q5TBK1 243 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 SULT1C3Q6IMI6 304 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 IRGCQ6NXR0 463 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 DHRS13Q6UX07 377 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 CDHR3Q6ZTQ4 885 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 TMEM151AQ8N4L1 468 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 PDPRQ8NCN5 879 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 PPFIBP2Q8ND30 876 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 OR4D9Q8NGE8 314 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 IQCGQ9H095 443 aaKnown RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 ATG10Q9H0Y0 220 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 ACBD3Q9H3P7 528 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 ZNF446Q9NWS9 450 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 SPHK1Q9NYA1 384 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 ACTR10Q9NZ32 417 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 CPSF2Q9P2I0 782 aaKnown RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 MN1Q10571 1320 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 UBXN8O00124 270 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 TK2O00142 265 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 PRICKLE3O43900 615 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 SASH3O75995 380 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 C9P02748 559 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 HOXB3P14651 431 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 CCND1P24385 295 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 OAS2P29728 719 aaKnown RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 PRDX3P30048 256 aaKnown RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 NAE1Q13564 534 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 CCDC153Q494R4 210 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 C16orf46Q6P387 395 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 SUSD1Q6UWL2 747 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 ZNF574Q6ZN55 896 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 RBM44Q6ZP01 1051 aaKnown RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 TMPRSS9Q7Z410 1059 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 TAX1BP1Q86VP1 789 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 GOLGA6L1Q8N7Z2 621 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 OR56A3Q8NH54 315 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 TGM7Q96PF1 710 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 CD180Q99467 661 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 SSU72Q9NP77 194 aaKnown RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 CCDC177Q9NQR7 707 aaPredicted RBP16.55■□□□□ 0.24
LIG1-204ENST00000542460 PDP2Q9P2J9 529 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 POMT2Q9UKY4 750 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 TMCO1Q9UM00 188 aa16.55■□□□□ 0.24
LIG1-204ENST00000542460 ASXL3Q9C0F0 2248 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 A0A1W2PPV9 198 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 TARM1B6A8C7 271 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 KLK8O60259 260 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 SMIM24O75264 130 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 SPAG7O75391 227 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 SBK3P0C264 359 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 GFAPP14136 432 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 CREB1P16220 341 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 UGT2B7P16662 529 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 TAC1P20366 129 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 KCNA4P22459 653 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 PEBP1P30086 187 aaKnown RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 RPA3P35244 121 aaPredicted RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 GGT5P36269 586 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 GFERP55789 205 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 TBPL1P62380 186 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 TSTA3Q13630 321 aaPredicted RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 ZXDCQ2QGD7 858 aaPredicted RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 AGBL2Q5U5Z8 902 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 CDCP2Q5VXM1 449 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 CAPN13Q6MZZ7 669 aaPredicted RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 SPESP1Q6UW49 350 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 MED8Q96G25 268 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 OR2A14Q96R47 310 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 SH3GL2Q99962 352 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 PCBD2Q9H0N5 130 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 CNOT10Q9H9A5 744 aaKnown RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 WWOXQ9NZC7 414 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 TMEM9Q9P0T7 183 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 PTBP2Q9UKA9 531 aaKnown RBP16.54■□□□□ 0.24
LIG1-204ENST00000542460 EMCNQ9ULC0 261 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 PLLPQ9Y342 182 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 PCDHB11Q9Y5F2 797 aa16.54■□□□□ 0.24
LIG1-204ENST00000542460 DYNC1I1O14576 645 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 TOX3O15405 576 aaPredicted RBP16.53■□□□□ 0.24
LIG1-204ENST00000542460 TAPBPO15533 448 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 TYROBPO43914 113 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 PLIN3O60664 434 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 IPO13O94829 963 aaKnown RBP16.53■□□□□ 0.24
LIG1-204ENST00000542460 FKBP9O95302 570 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 MPSTP25325 297 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 ALDH18A1P54886 795 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms