RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FAM45BPQ6NSW5 357 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 CYB5D1Q6P9G0 228 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 CACNA2D3Q8IZS8 1091 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 NLGN4XQ8N0W4 816 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 C19orf47Q8N9M1 422 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 SLC38A9Q8NBW4 561 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 NLGN4YQ8NFZ3 816 aaPredicted RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 OR1L3Q8NH93 324 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 FAM45AQ8TCE6 357 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 ELMO2Q96JJ3 720 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 PKP4Q99569 1192 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 SLC12A9Q9BXP2 914 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 ULBP3Q9BZM4 244 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 RHOJQ9H4E5 214 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 CPNE5Q9HCH3 593 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 NSMCE4AQ9NXX6 385 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 TRMT6Q9UJA5 497 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 TSR3Q9UJK0 312 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 ADAMTS6Q9UKP5 1117 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 RARRES3Q9UL19 164 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 SLC39A10Q9ULF5 831 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 ISM1B1AKI9 464 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 KIAA0754O94854 1291 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 FKBP9O95302 570 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 WISP3O95389 354 aaPredicted RBP12.5□□□□□ -0.41
VPS28-216ENST00000533806 HSD17B2P37059 387 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 STAT5AP42229 794 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 TAS2R39P59534 338 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 VAC14Q08AM6 782 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 ABHD18Q0P651 414 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 ILF2Q12905 390 aaKnown RBP12.5□□□□□ -0.41
VPS28-216ENST00000533806 FCRL6Q6DN72 434 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 C6orf15Q6UXA7 325 aaPredicted RBP12.5□□□□□ -0.41
VPS28-216ENST00000533806 ZNF517Q6ZMY9 492 aaPredicted RBP12.5□□□□□ -0.41
VPS28-216ENST00000533806 CAPN12Q6ZSI9 719 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 VASH2Q86V25 355 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 FAM20CQ8IXL6 584 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 CEP112Q8N8E3 955 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 GPATCH11Q8N954 259 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 ZNF480Q8WV37 535 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 SOHLH2Q9NX45 425 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 LNPEPQ9UIQ6 1025 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 LHX6Q9UPM6 363 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 PDE10AQ9Y233 779 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 KLHL20Q9Y2M5 609 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 MTO1Q9Y2Z2 717 aaKnown RBP12.5□□□□□ -0.41
VPS28-216ENST00000533806 PCDHB3Q9Y5E6 796 aa12.5□□□□□ -0.41
VPS28-216ENST00000533806 KALRNO60229 2985 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 FAM208BQ5VWN6 2430 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 LOC101059948A0A1B0GTJ6 334 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 FAM95CA0A1B0GW59 222 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 TARM1B6A8C7 271 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 E7ENX8 843 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 SLC16A5O15375 505 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 ZBTB14O43829 449 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 C8GP07360 202 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 CTSBP07858 339 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 MAGP20916 626 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 PSMB5P28074 263 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 OAS2P29728 719 aaKnown RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 GRIA3P42263 894 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 GCGRP47871 477 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 RGS4P49798 205 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 IL2P60568 153 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 YBX1P67809 324 aaKnown RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 TAP2Q03519 686 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 SP140Q13342 867 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 SF1Q15637 639 aaKnown RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 ZXDCQ2QGD7 858 aaPredicted RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 KBTBD12Q3ZCT8 623 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 UBAP2Q5T6F2 1119 aaKnown RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 PRAMEF17Q5VTA0 474 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 UBE2R2Q712K3 238 aaPredicted RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 CCDC25Q86WR0 208 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 CEP97Q8IW35 865 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 RAB42Q8N4Z0 105 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 ESX1Q8N693 406 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 GALNT6Q8NCL4 622 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 OR2L3Q8NG85 312 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 FBF1Q8TES7 1133 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 ZUFSPQ96AP4 578 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 VPS39Q96JC1 886 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 LRFN5Q96NI6 719 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 ZNF285Q96NJ3 590 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 CPNE1Q99829 537 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 FUT8Q9BYC5 575 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 AKIRIN1Q9H9L7 192 aaPredicted RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 L2HGDHQ9H9P8 463 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 PARVBQ9HBI1 364 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 POPDC3Q9HBV1 291 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 IKZF3Q9UKT9 509 aa12.49□□□□□ -0.41
VPS28-216ENST00000533806 SMG1Q96Q15 3661 aaKnown RBP12.49□□□□□ -0.41
VPS28-216ENST00000533806 IGKV1-8A0A0C4DH67 115 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 TMEM150CB9EJG8 249 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 SCRG1O75711 98 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 LIFP15018 202 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 ZNF37AP17032 561 aaPredicted RBP12.48□□□□□ -0.41
VPS28-216ENST00000533806 F8A1P23610 371 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 IMPA1P29218 277 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 RORAP35398 523 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms