RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 SLC22A14Q9Y267 594 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 PCDHB14Q9Y5E9 798 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 PCDHGA11Q9Y5H2 935 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 CXCR6O00574 342 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 CLGNO14967 610 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 ALBP02768 609 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 RHOP08100 348 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 HOXA9P31269 272 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 ERVFC1P60507 584 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 CSTF3Q12996 717 aaKnown RBP14.94□□□□□ -0.02
USH1C-207ENST00000527720 DAG1Q14118 895 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 LDLRAP1Q5SW96 308 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 TMEM215Q68D42 235 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 SERPINA13PQ6UXR4 307 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 DPPA4Q7L190 304 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 GPR149Q86SP6 731 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 ATL1Q8WXF7 558 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 TMBIM1Q969X1 311 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 METTL2AQ96IZ6 378 aaKnown RBP14.94□□□□□ -0.02
USH1C-207ENST00000527720 CPPED1Q9BRF8 314 aaPredicted RBP14.94□□□□□ -0.02
USH1C-207ENST00000527720 PCDH12Q9NPG4 1184 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 SERHLQ9NQF3 203 aa14.94□□□□□ -0.02
USH1C-207ENST00000527720 RSL24D1Q9UHA3 163 aaKnown RBP14.94□□□□□ -0.02
USH1C-207ENST00000527720 NUP210Q8TEM1 1887 aaPredicted RBP14.93□□□□□ -0.02
USH1C-207ENST00000527720 HIDE1A8MVS5 230 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 H3BSA7 217 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 PRMT3O60678 531 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 PSIP1O75475 530 aaKnown RBP14.93□□□□□ -0.02
USH1C-207ENST00000527720 SNAP29O95721 258 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 MT-ND1P03886 318 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 TIMP2P16035 220 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 HOXB9P17482 250 aaPredicted RBP14.93□□□□□ -0.02
USH1C-207ENST00000527720 AMD1P17707 334 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 SDC1P18827 310 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 MTHFRP42898 656 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 CDK9P50750 372 aaKnown RBP14.93□□□□□ -0.02
USH1C-207ENST00000527720 PFN3P60673 137 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 ESRRGP62508 458 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 PHC1P78364 1004 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 TMEM259Q4ZIN3 620 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 Q6ZVL8 140 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 KLHDC8AQ8IYD2 350 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 SVOPLQ8N434 492 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 CLHC1Q8NHS4 586 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 SCAMP4Q969E2 229 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 FAM162AQ96A26 154 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 SDCCAG3Q96C92 435 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 SLC47A1Q96FL8 570 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 FBXL20Q96IG2 436 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 LINC00597Q9H2U6 94 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 LIMD1Q9UGP4 676 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 IL36AQ9UHA7 158 aa14.93□□□□□ -0.02
USH1C-207ENST00000527720 SLC9A3R1O14745 358 aaPredicted RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 WNT9AO14904 365 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 ALPLP05186 524 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 SRPRAP08240 638 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 MAP4P27816 1152 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 HALP42357 657 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 PCDH1Q08174 1060 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 EPS8Q12929 822 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 CHIT1Q13231 466 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 MYBPC3Q14896 1274 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 RBBP5Q15291 538 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 ZNF284Q2VY69 593 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 ZNF805Q5CZA5 627 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 ARSIQ5FYB1 569 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 TMEM214Q6NUQ4 689 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 TBPL2Q6SJ96 375 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 CYP2U1Q7Z449 544 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 BTN2A2Q8WVV5 523 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 GLMNQ92990 594 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 PYCR2Q96C36 320 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 DCAF13Q9NV06 445 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 ZBBXA8MT70 800 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 PRPS1L1P21108 318 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 ETV3P41162 512 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 GZMMP51124 257 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 NEK2P51955 445 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 ABHD18Q0P651 414 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 PLA2G4EQ3MJ16 856 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 PLPP4Q5VZY2 271 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 GCNT7Q6ZNI0 430 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 TECPR1Q7Z6L1 1165 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 GPR180Q86V85 440 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 ZDHHC13Q8IUH4 622 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 RAVER1Q8IY67 606 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 PNPT1Q8TCS8 783 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 FAM120BQ96EK7 910 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 RIOK2Q9BVS4 552 aaKnown RBP14.92□□□□□ -0.02
USH1C-207ENST00000527720 FBXO10Q9UK96 956 aa14.92□□□□□ -0.02
USH1C-207ENST00000527720 FADS2P1A8MWK0 482 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 TTC34A8MYJ7 566 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 ZNF701M0R085 212 aaPredicted RBP14.91□□□□□ -0.02
USH1C-207ENST00000527720 PER2O15055 1255 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 PRAMEF4O60810 478 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 MTX2O75431 263 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 CREG1O75629 220 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 RFPL2O75678 378 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 ASLP04424 464 aa14.91□□□□□ -0.02
USH1C-207ENST00000527720 HNRNPA1P09651 372 aaKnown RBP eCLIP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms