RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 DANCRP0C864 163 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 RBP5P82980 135 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 CBWD6Q4V339 395 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 CBWD3Q5JTY5 395 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 PWWP2BQ6NUJ5 590 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 BHLHB9Q6PI77 547 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 PLPPR4Q7Z2D5 763 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 ZNF485Q8NCK3 441 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 NPEPL1Q8NDH3 523 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 PHLDA1Q8WV24 401 aaPredicted RBP4.13□□□□□ -1.75
CD44-223ENST00000526553 DYRK2Q92630 601 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 SLAMF9Q96A28 289 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 PTERQ96BW5 349 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 DHX58Q96C10 678 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 GBP5Q96PP8 586 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 SPAG5Q96R06 1193 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 SERINC1Q9NRX5 453 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 DPP3Q9NY33 737 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 STK26Q9P289 416 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 LRWD1Q9UFC0 647 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 ANAPC5Q9UJX4 755 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 GTF3C4Q9UKN8 822 aa4.13□□□□□ -1.75
CD44-223ENST00000526553 PSMA7O14818 248 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 WDR46O15213 610 aaKnown RBP4.12□□□□□ -1.75
CD44-223ENST00000526553 IPO8O15397 1037 aaKnown RBP4.12□□□□□ -1.75
CD44-223ENST00000526553 KHDRBS3O75525 346 aaKnown RBP4.12□□□□□ -1.75
CD44-223ENST00000526553 DFFBO76075 338 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 ZFAND5O76080 213 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 GPIP06744 558 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 IGHV4-31P0DP07 118 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 IFNAR1P17181 557 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 CPT2P23786 658 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 CCR3P51677 355 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 CDH13P55290 713 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 HERV-K104P61576 105 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 SNRPD1P62314 119 aaKnown RBP4.12□□□□□ -1.75
CD44-223ENST00000526553 SNAPC1Q16533 368 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 ITPRIPL2Q3MIP1 535 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 NUDT13Q86X67 352 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 METTL23Q86XA0 190 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 TMEM139Q8IV31 216 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 ZNF595Q8IYB9 648 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 LSMEM2Q8N112 164 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 OR8H3Q8N146 312 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 TMEM178AQ8NBL3 297 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 DEPDC1BQ8WUY9 529 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 SUSD6Q92537 303 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 TAF15Q92804 592 aaKnown RBP eCLIP4.12□□□□□ -1.75
CD44-223ENST00000526553 FAM162AQ96A26 154 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 LINC00479Q96M42 142 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 ZNF599Q96NL3 588 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 EGLN1Q9GZT9 426 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 S1PR5Q9H228 398 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 GRPEL1Q9HAV7 217 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 MRGBPQ9NV56 204 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 KLHL8Q9P2G9 620 aaPredicted RBP4.12□□□□□ -1.75
CD44-223ENST00000526553 WDR35Q9P2L0 1181 aa4.12□□□□□ -1.75
CD44-223ENST00000526553 DDX25Q9UHL0 483 aaKnown RBP4.12□□□□□ -1.75
CD44-223ENST00000526553 PSMD10O75832 226 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 HSPA8P11142 646 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 ERCC2P18074 760 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 TYMPP19971 482 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 GP5P40197 560 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 CLK1P49759 484 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 RAB28P51157 221 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 CSE1LP55060 971 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 HSPB3Q12988 150 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 CTU2Q2VPK5 515 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 PDLIM3Q53GG5 364 aaPredicted RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 ARMC4Q5T2S8 1044 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 FAAP20Q6NZ36 180 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 RBPMS2Q6ZRY4 209 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 Q6ZSR9 355 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 ERN2Q76MJ5 926 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 TC2NQ8N9U0 490 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 XXYLT1Q8NBI6 393 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 KBTBD8Q8NFY9 601 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 OR6J1Q8NGC5 347 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 OR4C3Q8NH37 302 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 OR52N5Q8NH56 324 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 CFAP61Q8NHU2 1237 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 SSMEM1Q8WWF3 244 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 HDAC11Q96DB2 347 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 SPDL1Q96EA4 605 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 POM121L2Q96KW2 1035 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 SLC25A23Q9BV35 468 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 NUP85Q9BW27 656 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 CPVLQ9H3G5 476 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 PIH1D3Q9NQM4 214 aaKnown RBP4.11□□□□□ -1.75
CD44-223ENST00000526553 GKN1Q9NS71 199 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 PLCXD1Q9NUJ7 323 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 RNF186Q9NXI6 227 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 CACNG4Q9UBN1 327 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 DAPK2Q9UIK4 370 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 GRID1Q9ULK0 1009 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 TRIM17Q9Y577 477 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 PRSS21Q9Y6M0 314 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 UNC13AQ9UPW8 1703 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 PCDH11YQ9BZA8 1340 aa4.11□□□□□ -1.75
CD44-223ENST00000526553 ANTXRLA6NF34 631 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms