RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 FAM205BPQ63HN1 556 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 FIP1L1Q6UN15 594 aaKnown RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 KBTBD6Q86V97 674 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 PIGZQ86VD9 579 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 CEP57Q86XR8 500 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 OR4C3Q8NH37 302 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 ZNF689Q96CS4 500 aaPredicted RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 LINC00479Q96M42 142 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 SPAG5Q96R06 1193 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 FNBP1Q96RU3 617 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 OLFM1Q99784 485 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 CENPOQ9BU64 300 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 SYNCQ9H7C4 482 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 SDR39U1Q9NRG7 319 aaPredicted RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 ARHGEF38Q9NXL2 777 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 C6orf203Q9P0P8 240 aaPredicted RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 TBC1D29Q9UFV1 150 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 PTRH2Q9Y3E5 179 aaKnown RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 RNF215Q9Y6U7 377 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 AKNAQ7Z591 1439 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 CEP170Q5SW79 1584 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 ZNF541Q9H0D2 1346 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 UQCRHLA0A096LP55 91 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 GTPBP10A4D1E9 387 aaKnown RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 A6NCN8 305 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 MTRF1O75570 445 aaKnown RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 CDC123O75794 336 aaPredicted RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 WDPCPO95876 746 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 UQCRHP07919 91 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 KRT5P13647 590 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CEBPBP17676 345 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CYP11B2P19099 503 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CSE1LP55060 971 aaKnown RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 UBASH3AP57075 661 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 SNRPD1P62314 119 aaKnown RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 SIRPAP78324 504 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CDR2Q01850 454 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CLPPQ16740 277 aaPredicted RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 PHLDA2Q53GA4 152 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 KLHL26Q53HC5 615 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CCDC158Q5M9N0 1113 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 PLEKHS1Q5SXH7 462 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 AP1ARQ63HQ0 302 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 PLBD1Q6P4A8 553 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 SNX32Q86XE0 403 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 LRRC49Q8IUZ0 686 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 RPAP2Q8IXW5 612 aaPredicted RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 FBXO39Q8N4B4 442 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 DCLK2Q8N568 766 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 TMEM178AQ8NBL3 297 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 MRGPRDQ8TDS7 321 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 CDRT15Q96T59 188 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 EGFL8Q99944 293 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 TREX2Q9BQ50 279 aaPredicted RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 BTBD10Q9BSF8 475 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 S1PR5Q9H228 398 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 ZDHHC18Q9NUE0 388 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 EXOC1Q9NV70 894 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 RNF186Q9NXI6 227 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 PSD3Q9NYI0 1048 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 FLRT3Q9NZU0 649 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 PAK5Q9P286 719 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 PCSK1NQ9UHG2 260 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 GTF3C4Q9UKN8 822 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 ATP6V0A2Q9Y487 856 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 PRSS21Q9Y6M0 314 aa3.5□□□□□ -1.85
CD44-217ENST00000525348 TP53BP1Q12888 1972 aaPredicted RBP3.5□□□□□ -1.85
CD44-217ENST00000525348 POLA1P09884 1462 aaPredicted RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 LOC102723996A0A087X1L8 192 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 IGKV3D-20A0A0C4DH25 116 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 LINC00854A0A1B0GVQ3 168 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 A0A1B0GVY2 172 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 A0A1W2PN81 502 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 NDUFAF8A1L188 74 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 MSGN1A6NI15 193 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 KRTAP9-6A8MVA2 160 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 SLCO1B7G3V0H7 640 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 KHDRBS3O75525 346 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 PRKRAO75569 313 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 SORBS2O94875 1100 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 FGFR1OPO95684 399 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 GZMAP12544 262 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 GCH1P30793 250 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 CHRNA7P36544 502 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 SLC6A12P48065 614 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 NRIP1P48552 1158 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 TPD52P55327 224 aaPredicted RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 SNX16P57768 344 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 CDK3Q00526 305 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 TRIM29Q14134 588 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 PCLAFQ15004 111 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 RRS1Q15050 365 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 XKR6Q5GH73 641 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 SPECC1Q5M775 1068 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 KRT79Q5XKE5 535 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 IRGCQ6NXR0 463 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 TMCO3Q6UWJ1 677 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 LINC00346Q8IVM7 164 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 CCDC65Q8IXS2 484 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 ARHGAP24Q8N264 748 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms