RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 KLF11O14901 512 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 IRF2P14316 349 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 MPZP25189 248 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 ALDH4A1P30038 563 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 WNT5AP41221 380 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 SNRPD1P62314 119 aaKnown RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 MAT1AQ00266 395 aaKnown RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 CAMK2DQ13557 499 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 ITGA9Q13797 1035 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 CA9Q16790 459 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 UGP2Q16851 508 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 MCMDC2Q4G0Z9 681 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 TCTE1Q5JU00 501 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 ARHGAP17Q68EM7 881 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 LGI2Q8N0V4 545 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 ZNF843Q8N446 348 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 RYBPQ8N488 228 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 CHCHD4Q8N4Q1 142 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 RAB42Q8N4Z0 105 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 WDSUB1Q8N9V3 476 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 XXYLT1Q8NBI6 393 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 TRIM58Q8NG06 486 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 ROBO4Q8WZ75 1007 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 VPS33AQ96AX1 596 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 LINC00615Q96LM1 132 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 ZNF558Q96NG5 402 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 FNBP1Q96RU3 617 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 AP1M1Q9BXS5 423 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 FAM49AQ9H0Q0 323 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 CCDC177Q9NQR7 707 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 SH3GLB2Q9NR46 395 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 FAM207AQ9NSI2 230 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 P4HTMQ9NXG6 502 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 TBC1D7Q9P0N9 293 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 NFKBIL1Q9UBC1 381 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 STUB1Q9UNE7 303 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 TNNQ9UQP3 1299 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 TRIM17Q9Y577 477 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 A0A1W2PPQ1 181 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 URADA6NGE7 173 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 C2orf81A6NN90 581 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 ENO4A6NNW6 628 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 SLCO1B7G3V0H7 640 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 SLCO2B1O94956 709 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CELF2O95319 508 aaKnown RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 IGLV1-44P01699 117 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 APOHP02749 345 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 ATP5BP06576 529 aaKnown RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 APOA4P06727 396 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CCDC175P0C221 793 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 RNF224P0DH78 156 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 IGHV4-31P0DP07 118 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 SAGP10523 405 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CEACAM1P13688 526 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 MYL6BP14649 208 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CSTF2P33240 577 aaKnown RBP eCLIP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 HSPA4P34932 840 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 LHX1P48742 406 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 MAZP56270 477 aaKnown RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 GNB1P62873 340 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 RBPJQ06330 500 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 KLC1Q07866 573 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 VEZF1Q14119 521 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 P2RY6Q15077 328 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 TEAD2Q15562 447 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 PHKG1Q16816 387 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 RBPMS2Q6ZRY4 209 aaKnown RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 MAML2Q8IZL2 1156 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 ADAD2Q8NCV1 583 aaKnown RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 MRGPRDQ8TDS7 321 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 TMEM190Q8WZ59 177 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 OTUB1Q96FW1 271 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 LITAFQ99732 161 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 WDR13Q9H1Z4 485 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 TRPV4Q9HBA0 871 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CDH20Q9HBT6 801 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CHST11Q9NPF2 352 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 C2orf42Q9NWW7 574 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 CWC25Q9NXE8 425 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 C19orf25Q9UFG5 118 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 GRID1Q9ULK0 1009 aa4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 ISY1Q9ULR0 285 aaKnown RBP4.38□□□□□ -1.71
HMGB1P38-201ENST00000490557 IGHV4-4A0A075B6R2 117 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 A0A1W2PPM1 405 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 ARPC2O15144 300 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 EPHB6O15197 1021 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 SPRY1O43609 319 aaPredicted RBP4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 DFFBO76075 338 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 ACSL3O95573 720 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 PAK4O96013 591 aaPredicted RBP4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 OR52Z1P0C646 297 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 FAM157CP0CG43 387 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 ACHEP22303 614 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 PPP5CP53041 499 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 B3GALT5-AS1P59052 145 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 ACSM1Q08AH1 577 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 TAF10Q12962 218 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 HNRNPDQ14103 355 aaKnown RBP4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 SQLEQ14534 574 aa4.37□□□□□ -1.71
HMGB1P38-201ENST00000490557 COG2Q14746 738 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms