RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 PDSS2Q86YH6 399 aa17.24■□□□□ 0.35
NPHP4-209ENST00000489180 FBXO15Q8NCQ5 510 aaPredicted RBP17.24■□□□□ 0.35
NPHP4-209ENST00000489180 TLE6Q9H808 572 aa17.24■□□□□ 0.35
NPHP4-209ENST00000489180 SLC22A1O15245 554 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 STATHP02808 62 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 CPN2P22792 545 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 NDUFA9Q16795 377 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 CRB2Q5IJ48 1285 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 CCSAPQ6IQ19 270 aaPredicted RBP17.23■□□□□ 0.35
NPHP4-209ENST00000489180 COMMD4Q9H0A8 199 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 GKN1Q9NS71 199 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 KCTD3Q9Y597 815 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 TPD52L2O43399 206 aaKnown RBP17.23■□□□□ 0.35
NPHP4-209ENST00000489180 PRKACGP22612 351 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 GSK3BP49841 420 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 IGDCC3Q8IVU1 814 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 GPR151Q8TDV0 419 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 PKP4Q99569 1192 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 MGME1Q9BQP7 344 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 CERS4Q9HA82 394 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 TCF7L1Q9HCS4 588 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 IFT46Q9NQC8 304 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 HAS3O00219 553 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 SLC31A1O15431 190 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 NFATC1O95644 943 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 CDKN2AIPNLQ96HQ2 116 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 DCSTAMPQ9H295 470 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 PLEKHA1Q9HB21 404 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 C12orf4Q9NQ89 552 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 ACVRL1P37023 503 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 TLR1Q15399 786 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 MBLAC2Q68D91 279 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 NPAS4Q8IUM7 802 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 ZBED6CLQ96FA7 236 aaPredicted RBP17.23■□□□□ 0.35
NPHP4-209ENST00000489180 RIPOR3Q96MK2 946 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 BARD1Q99728 777 aaKnown RBP17.23■□□□□ 0.35
NPHP4-209ENST00000489180 MINDY3Q9H8M7 445 aa17.23■□□□□ 0.35
NPHP4-209ENST00000489180 M0R2N6 131 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 TLR4O00206 839 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 PNLIPRP1P54315 467 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 SLC13A2Q13183 592 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 SLBPQ14493 270 aaKnown RBP eCLIP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 PCLAFQ15004 111 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 CLDN4O14493 209 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 FKTNO75072 461 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 GDF5P43026 501 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 VBP1P61758 197 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 PPP3R1P63098 170 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 LAPTM4AQ15012 233 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 NTAN1Q96AB6 310 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 COL21A1Q96P44 957 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 AFDNP55196 1824 aaKnown RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 LOC100130705A0A1B0GUX0 176 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 SLC2A2P11168 524 aaPredicted RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 ANXA8P13928 327 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 VARSP26640 1264 aaKnown RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 CRISP3P54108 245 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 PHC1P78364 1004 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 RABL3Q5HYI8 236 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 SLC39A4Q6P5W5 647 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 LYSMD3Q7Z3D4 306 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 ARMC10Q8N2F6 343 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 GRHL3Q8TE85 626 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 HTATIP2Q9BUP3 242 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 RNF39Q9H2S5 420 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 DPEP2Q9H4A9 486 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 MRPS30Q9NP92 439 aaKnown RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 VPS29Q9UBQ0 182 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 PMM2O15305 246 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 ACVR2AP27037 513 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 RAB2AP61019 212 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 TSPAN5P62079 268 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 SP2Q02086 613 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 MEP1AQ16819 746 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 FBXL22Q6P050 247 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 ZNF615Q8N8J6 731 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 DUSP11O75319 330 aaKnown RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 DGKGP49619 791 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 TSTQ16762 297 aaKnown RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 SRMSQ9H3Y6 488 aa17.22■□□□□ 0.35
NPHP4-209ENST00000489180 MOV10Q9HCE1 1003 aaKnown RBP17.22■□□□□ 0.35
NPHP4-209ENST00000489180 CAMTA1Q9Y6Y1 1673 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 AOC1P19801 751 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 ACADLP28330 430 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 CD83Q01151 205 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 PLEKHG6Q3KR16 790 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 ZCCHC12Q6PEW1 402 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 CCSER2Q9H7U1 834 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 ZBTB26Q9HCK0 441 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 SLC22A14Q9Y267 594 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 GMEB1Q9Y692 573 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 ATRNL1Q5VV63 1379 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 CLIC3O95833 236 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 ATF4P18848 351 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-209ENST00000489180 SLC18A2Q05940 514 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 WSCD2Q2TBF2 565 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 OR4F6Q8NGB9 312 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 SETD6Q8TBK2 473 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 MCCC1Q96RQ3 725 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-209ENST00000489180 TRIM2Q9C040 744 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms