RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MED8Q96G25 268 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 AHCYL2Q96HN2 611 aaKnown RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 PAIP2Q9BPZ3 127 aaKnown RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 ABCF3Q9NUQ8 709 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 HRASLS2Q9NWW9 162 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 OR6C2Q9NZP2 312 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 COPG2Q9UBF2 871 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 CEP250Q9BV73 2442 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 IGHV1OR21-1A0A087WYE8 117 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 PIPSLA2A3N6 862 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 A8MT66 165 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 ISM1B1AKI9 464 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 E7ENX8 843 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 BTN3A3O00478 584 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 TNFSF14O43557 240 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 STK16O75716 305 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 IPO13O94829 963 aaKnown RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 CHRM5P08912 532 aaPredicted RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 KCNA4P22459 653 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 ACP1P24666 158 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 GGT5P36269 586 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 ETV4P43268 484 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 HSPA7P48741 367 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 PRKAA2P54646 552 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 TAP2Q03519 686 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 PRKAA1Q13131 559 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 SETDB1Q15047 1291 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 ZXDCQ2QGD7 858 aaPredicted RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 PTCHD3Q3KNS1 767 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 THEMIS2Q5TEJ8 643 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 NKAIN2Q5VXU1 208 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 CAPN13Q6MZZ7 669 aaPredicted RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 SUSD1Q6UWL2 747 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 SPRED1Q7Z699 444 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 OOSP2Q86WS3 158 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 LRRC56Q8IYG6 542 aaPredicted RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 OR56A3Q8NH54 315 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 HMGCLL1Q8TB92 370 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 MDM1Q8TC05 714 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 RSC1A1Q92681 617 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 PYCR2Q96C36 320 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 CCDC126Q96EE4 140 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 CCDC3Q9BQI4 270 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 TMEM79Q9BSE2 394 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 CD244Q9BZW8 370 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 EPB41L1Q9H4G0 881 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 CNOT10Q9H9A5 744 aaKnown RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 MLXIPLQ9NP71 852 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 CCDC177Q9NQR7 707 aaPredicted RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 SPHK1Q9NYA1 384 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 OGFRQ9NZT2 677 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 TNPO3Q9Y5L0 923 aaKnown RBP11.84□□□□□ -0.51
SDC1-206ENST00000482879 KNTC1P50748 2209 aa11.84□□□□□ -0.51
SDC1-206ENST00000482879 A0A1W2PPV9 198 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 GSAPA4D1B5 854 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 WDR91A4D1P6 747 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 OR5K3A6NET4 321 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 LRRC14BA6NHZ5 514 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 STX16-NPEPL1H3BU86 382 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 STX16O14662 325 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 DUX1O43812 170 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 CCNT2O60583 730 aaKnown RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 WDR47O94967 919 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 SIX3O95343 332 aaPredicted RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 BPGMP07738 259 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 NR1D1P20393 614 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 CCND1P24385 295 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 CD1CP29017 333 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 EEF1DP29692 281 aaKnown RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 OAS2P29728 719 aaKnown RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 ALDH3A1P30838 453 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 GDF5P43026 501 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 SERPINB4P48594 390 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 WDR4P57081 412 aaKnown RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 TBPL1P62380 186 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 CCL7P80098 99 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 GPLD1P80108 840 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 NFKB2Q00653 900 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 PCLAFQ15004 111 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 PCBP2Q15366 365 aaKnown RBP eCLIP11.83□□□□□ -0.52
SDC1-206ENST00000482879 USP53Q70EK8 1073 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 THOC6Q86W42 341 aaKnown RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 NUDCD3Q8IVD9 361 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 C10orf107Q8IVU9 208 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 DEFB124Q8NES8 71 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 UBTD2Q8WUN7 234 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 NCSTNQ92542 709 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 MECRQ9BV79 373 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 LRRN3Q9H3W5 708 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 SLC32A1Q9H598 525 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 INTS7Q9NVH2 962 aaKnown RBP11.83□□□□□ -0.52
SDC1-206ENST00000482879 OXSMQ9NWU1 459 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 ACTR10Q9NZ32 417 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 SLC22A14Q9Y267 594 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 PCDHB11Q9Y5F2 797 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 ENTPD2Q9Y5L3 495 aa11.83□□□□□ -0.52
SDC1-206ENST00000482879 MDC1Q14676 2089 aaKnown RBP11.82□□□□□ -0.52
SDC1-206ENST00000482879 C2orf74A8MZ97 194 aa11.82□□□□□ -0.52
SDC1-206ENST00000482879 MATN2O00339 956 aa11.82□□□□□ -0.52
SDC1-206ENST00000482879 PRICKLE3O43900 615 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms