RNA–Protein interactions for RNA: ENST00000479554.5

ATG4B-218, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 4

Gene ATG4B, Length 556 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-218ENST00000479554 CEACAM4O75871 244 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 SLCO2B1O94956 709 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 S1PR4O95977 384 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 CTSBP07858 339 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 CD63P08962 238 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 TPSB2P20231 275 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 CD9P21926 228 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 MGAT1P26572 445 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 NMBRP28336 390 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 TNFRSF8P28908 595 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 KCNJ1P48048 391 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 EIF3BP55884 814 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 VSNL1P62760 191 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 DCDP81605 110 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 GRB7Q14451 532 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 TPSAB1Q15661 275 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 CYP1B1Q16678 543 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 OTOAQ7RTW8 1153 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 IFT20Q8IY31 132 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 DNAJC22Q8N4W6 341 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 C2orf73Q8N5S3 287 aaPredicted RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 LMNTD1Q8N9Z9 388 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 OR2L8Q8NGY9 312 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 SKA2Q8WVK7 121 aaPredicted RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 IL17FQ96PD4 163 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 GBP5Q96PP8 586 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 NDC1Q9BTX1 674 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 DDX47Q9H0S4 455 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 MRM3Q9HC36 420 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 HOMER3Q9NSC5 361 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 INTS7Q9NVH2 962 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 SYBUQ9NX95 663 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 EURLQ9NYK6 297 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 IFT80Q9P2H3 777 aaPredicted RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 SLC39A10Q9ULF5 831 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 KLHL20Q9Y2M5 609 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 PTRH2Q9Y3E5 179 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 PCDHGB7Q9Y5F8 929 aa13.79□□□□□ -0.2
ATG4B-218ENST00000479554 TNRC6AQ8NDV7 1962 aaKnown RBP13.79□□□□□ -0.2
ATG4B-218ENST00000479554 PRRC2CQ9Y520 2896 aaKnown RBP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 A6NL46 340 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 TTLL8A6PVC2 850 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 RAD51CO43502 376 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 KLF7O75840 302 aaPredicted RBP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 RPS3P23396 243 aaKnown RBP eCLIP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 FOLR3P41439 243 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 CD97P48960 835 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 CDK16Q00536 496 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 DHX34Q14147 1143 aaKnown RBP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 UBAP2LQ14157 1087 aaKnown RBP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 SLC9A5Q14940 896 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 MRNIPQ6NTE8 343 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 LRRC8BQ6P9F7 803 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 MRGPREQ86SM8 312 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 SDCCAG8Q86SQ7 713 aaPredicted RBP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 RAB42Q8N4Z0 105 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 EFCAB3Q8N7B9 438 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 PRELID2Q8N945 189 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 FDCSPQ8NFU4 85 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 DLG3Q92796 817 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 RAD51AP1Q96B01 352 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 MFSD3Q96ES6 412 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 IP6K3Q96PC2 410 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 KIFC1Q9BW19 673 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 NUDT9Q9BW91 350 aa13.78□□□□□ -0.2
ATG4B-218ENST00000479554 DMGDHQ9UI17 866 aaKnown RBP13.78□□□□□ -0.2
ATG4B-218ENST00000479554 NBASA2RRP1 2371 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 FAM187AA6NFU0 413 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 PFDN6O15212 129 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 DPM1O60762 260 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 VAPBO95292 243 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 ARNTP27540 789 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 BDKRB1P46663 353 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 FNTAP49354 379 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 VPS41P49754 854 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 SARNPP82979 210 aaKnown RBP13.77□□□□□ -0.21
ATG4B-218ENST00000479554 SLC7A5Q01650 507 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 SSPNQ14714 243 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 SF1Q15637 639 aaKnown RBP13.77□□□□□ -0.21
ATG4B-218ENST00000479554 NADK2Q4G0N4 442 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 NKAIN1Q4KMZ8 207 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 CTSL3PQ5NE16 218 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 LRRK2Q5S007 2527 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 RNF187Q5TA31 235 aaPredicted RBP13.77□□□□□ -0.21
ATG4B-218ENST00000479554 CES3Q6UWW8 571 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 HPS6Q86YV9 775 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 CPT1CQ8TCG5 803 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 PCSK5Q92824 1860 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 MAGOHBQ96A72 148 aaKnown RBP13.77□□□□□ -0.21
ATG4B-218ENST00000479554 FOPNLQ96NB1 174 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 GPR83Q9NYM4 423 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 PCYOX1Q9UHG3 505 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 SOX13Q9UN79 622 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 RUVBL2Q9Y230 463 aaKnown RBP13.77□□□□□ -0.21
ATG4B-218ENST00000479554 NFS1Q9Y697 457 aa13.77□□□□□ -0.21
ATG4B-218ENST00000479554 SNRNP200O75643 2136 aaKnown RBP13.76□□□□□ -0.21
ATG4B-218ENST00000479554 FER1L5A0AVI2 2057 aa13.76□□□□□ -0.21
ATG4B-218ENST00000479554 TCRBV7S3A2A0A539 114 aa13.76□□□□□ -0.21
ATG4B-218ENST00000479554 GOLGA8KD6RF30 607 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms