RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TRIB3Q96RU7 358 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SPOCK3Q9BQ16 436 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 TUBGCP2Q9BSJ2 902 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 DHRS4Q9BTZ2 278 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 UCK2Q9BZX2 261 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SLC7A5P2Q9GIP4 190 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 LHPPQ9H008 270 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 CXXC4Q9H2H0 198 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 KCNF1Q9H3M0 494 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 CLSTN2Q9H4D0 955 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SEPT11Q9NVA2 429 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 RBM22Q9NW64 420 aaKnown RBP eCLIP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 TAB2Q9NYJ8 693 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 PTGFRNQ9P2B2 879 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 IFT80Q9P2H3 777 aaPredicted RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SERTAD3Q9UJW9 196 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 PADI2Q9Y2J8 665 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 KLHL20Q9Y2M5 609 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 MEMO1Q9Y316 297 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 LUC7L2Q9Y383 392 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SCN3AQ9NY46 2000 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HEATR5BQ9P2D3 2071 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ATRQ13535 2644 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 NKX2-6A6NCS4 301 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 TMEM191CA6NGB0 347 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SGTAO43765 313 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 VEGFDO43915 354 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 PRPSAP2O60256 369 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 OR2B3O76000 313 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SLCO2B1O94956 709 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SLITRK5O94991 958 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 FGFR1OPO95684 399 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 MT-CYBP00156 380 aaPredicted RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CALB1P05937 261 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 TPBGLP0DKB5 382 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 HLA-DPA1P20036 260 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 MMP11P24347 488 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 MCM3P25205 808 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 NR0B1P51843 470 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CDH6P55285 790 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ADAM8P78325 824 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 DCDP81605 110 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ADCY2Q08462 1091 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 DMPKQ09013 629 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SNTB1Q13884 538 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 BECN1Q14457 450 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 NFKBIBQ15653 356 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 METRNLQ641Q3 311 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 RHBDD2Q6NTF9 364 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ARMC6Q6NXE6 501 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 KLHL35Q6PF15 583 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 TMCO3Q6UWJ1 677 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 DET1Q7L5Y6 550 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 AMZ2Q86W34 360 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CHERPQ8IWX8 916 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 PRSS58Q8IYP2 241 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ADGRF3Q8IZF5 1079 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SHISA5Q8N114 240 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 NDUFAF2Q8N183 169 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SIRT6Q8N6T7 355 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 OR11G2Q8NGC1 345 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 GIMAP7Q8NHV1 300 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 FLVCR1-AS1Q8TAF5 88 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 GDAP1Q8TB36 358 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CCHCR1Q8TD31 782 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 BRIX1Q8TDN6 353 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 HSPH1Q92598 858 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CCDC34Q96HJ3 373 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 LMF1Q96S06 567 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 AGPAT1Q99943 283 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ZSCAN5AQ9BUG6 496 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 HES7Q9BYE0 225 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 PITPNM3Q9BZ71 974 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 POLR1EQ9GZS1 481 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 PIF1Q9H611 641 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 EPS8L2Q9H6S3 715 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 KIR3DX1Q9H7L2 352 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ZWILCHQ9H900 591 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 FANCEQ9HB96 536 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF160Q9HCG1 818 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 PCDH18Q9HCL0 1135 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 IL26Q9NPH9 171 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 SPHK1Q9NYA1 384 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 STOX2Q9P2F5 926 aaPredicted RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CTSFQ9UBX1 484 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 NDOR1Q9UHB4 597 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 CDC23Q9UJX2 597 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF835Q9Y2P0 537 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF711Q9Y462 761 aa5.06□□□□□ -1.6
PTPN4-209ENST00000469511 FBN1P35555 2871 aaKnown RBP5.06□□□□□ -1.6
PTPN4-209ENST00000469511 RGSL1A5PLK6 1076 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 GPR89AB7ZAQ6 455 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 KCNK1O00180 336 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 PES1O00541 588 aaKnown RBP5.05□□□□□ -1.6
PTPN4-209ENST00000469511 GAPDHSO14556 408 aaPredicted RBP5.05□□□□□ -1.6
PTPN4-209ENST00000469511 FFAR3O14843 346 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 MATN3O15232 486 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 GPR42O15529 346 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 CLEC3AO75596 197 aa5.05□□□□□ -1.6
PTPN4-209ENST00000469511 WDPCPO95876 746 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms