RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MAPK9P45984 424 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 CARSP49589 748 aaKnown RBP11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 PLOD1Q02809 727 aaPredicted RBP11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 RPA4Q13156 261 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 BOP1Q14137 746 aaKnown RBP11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 TEX35Q5T0J7 233 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 TEDDM1Q5T9Z0 273 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 JMJD6Q6NYC1 403 aaPredicted RBP11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 ZNF449Q6P9G9 518 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 CAPN12Q6ZSI9 719 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 KIAA0408Q6ZU52 694 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 GALNT7Q86SF2 657 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 KRT222Q8N1A0 295 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 C9orf72Q96LT7 481 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 FMO2Q99518 471 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 TWSG1Q9GZX9 223 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 RAB33BQ9H082 229 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 WWP1Q9H0M0 922 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 MOCS1Q9NZB8 636 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 OGFRQ9NZT2 677 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 EPHA6Q9UF33 1036 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 CROTQ9UKG9 612 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 PSMD13Q9UNM6 376 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 NAV3Q8IVL0 2385 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 TCRBV9S1A1TA0A576 114 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC5A10A0PJK1 596 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 PIPSLA2A3N6 862 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 OR52A4PA6NMU1 304 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 KPNA5O15131 536 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 NIPSNAP2O75323 286 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 HAUS5O94927 633 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 SLU7O95391 586 aaKnown RBP11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 F7P08709 466 aaPredicted RBP11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 PKMP14618 531 aaKnown RBP11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 AOAHP28039 575 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 FMO4P31512 558 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 CCR7P32248 378 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 GPX6P59796 221 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 NR6A1Q15406 480 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 SYTL3Q4VX76 610 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 CNSTQ6PJW8 725 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 C6orf15Q6UXA7 325 aaPredicted RBP11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 C3orf62Q6ZUJ4 267 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 CYS1Q717R9 158 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 RELL1Q8IUW5 271 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 Q8NA96 180 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 ASZ1Q8WWH4 475 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 RMDN2Q96LZ7 410 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 C12orf66Q96MD2 445 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 OR52A5Q9H2C5 316 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 CCDC68Q9H2F9 335 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 ZFATQ9P243 1243 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC17A6Q9P2U8 582 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 KLHL3Q9UH77 587 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 PCDHGB7Q9Y5F8 929 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 COMMD10Q9Y6G5 202 aa11.54□□□□□ -0.56
SQSTM1-206ENST00000466342 SPAG6O75602 509 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 AHSGP02765 367 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 APOA4P06727 396 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 MTHFD1P11586 935 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 TYRP1P17643 537 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 GABRB3P28472 473 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 PDHA2P29803 388 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 STX2P32856 288 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 PREPP48147 710 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 CD151P48509 253 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 GPR18Q14330 331 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 BRD3Q15059 726 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 TMED2Q15363 201 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 RPE65Q16518 533 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 ZNF549Q6P9A3 640 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 KLHL35Q6PF15 583 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 NAPRTQ6XQN6 538 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 OTOAQ7RTW8 1153 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC26A11Q86WA9 606 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 EIF1ADQ8N9N8 165 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 SPDYE1Q8NFV5 336 aaPredicted RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 ZFPM2Q8WW38 1151 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 CDKL2Q92772 493 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 KCNJ9Q92806 393 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 ZDHHC12Q96GR4 267 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 INSM2Q96T92 566 aaPredicted RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 AARSD1Q9BTE6 412 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 MFRPQ9BY79 579 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 IMP3Q9NV31 184 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 NSMCE4AQ9NXX6 385 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 CORO1CQ9ULV4 474 aaPredicted RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 NFU1Q9UMS0 254 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 CDYLQ9Y232 598 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 ZNF451Q9Y4E5 1061 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 PCDHGA6Q9Y5G7 932 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 CFAP20Q9Y6A4 193 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 TACC2O95359 2948 aa11.53□□□□□ -0.56
SQSTM1-206ENST00000466342 MDC1Q14676 2089 aaKnown RBP11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 E5RI56 91 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 IFRD1O00458 451 aaPredicted RBP11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 DPM1O60762 260 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 GPC4O75487 556 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 SLCO2B1O94956 709 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 C1QAP02745 245 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms