RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PFN3P60673 137 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 HTRA3P83110 453 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 GSTM4Q03013 218 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PLA2G4EQ3MJ16 856 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 ABRAXAS1Q6UWZ7 409 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 MICU2Q8IYU8 434 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 CYGBQ8WWM9 190 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 FIG4Q92562 907 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 VPS35Q96QK1 796 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 FBXO10Q9UK96 956 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PCDHB14Q9Y5E9 798 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PCDHGA11Q9Y5H2 935 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 V9GYQ6 96 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 CCDC160A6NGH7 325 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 ZBBXA8MT70 800 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 TTC34A8MYJ7 566 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 FAM220BPB1ANY3 271 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PRAMEF4O60810 478 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PSIP1O75475 530 aaKnown RBP14.66□□□□□ -0.06
LDLR-202ENST00000455727 ETV3P41162 512 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 GJA8P48165 433 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 ALDH3A2P51648 485 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 NEK2P51955 445 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 ARSFP54793 590 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 ZNF805Q5CZA5 627 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 LDLRAP1Q5SW96 308 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PRAMEF9Q5VWM5 478 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PLPP4Q5VZY2 271 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 TBPL2Q6SJ96 375 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 DPPA4Q7L190 304 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 TECPR1Q7Z6L1 1165 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 GPR149Q86SP6 731 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 KLHDC8AQ8IYD2 350 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 ZNF786Q8N393 782 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 TMEM132CQ8N3T6 1108 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 CLHC1Q8NHS4 586 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 CSGALNACT1Q8TDX6 532 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 BTN2A2Q8WVV5 523 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 PYCR2Q96C36 320 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 CPPED1Q9BRF8 314 aaPredicted RBP14.66□□□□□ -0.06
LDLR-202ENST00000455727 DNAJB9Q9UBS3 223 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 IL36AQ9UHA7 158 aa14.66□□□□□ -0.06
LDLR-202ENST00000455727 C16orf96A6NNT2 1141 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 H3BSA7 217 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 CXCR6O00574 342 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 SLC9A3R1O14745 358 aaPredicted RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 MTX2O75431 263 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 HPRP00739 348 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 SRPRAP08240 638 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 SYN1P17600 705 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 AMD1P17707 334 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 SDC1P18827 310 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 PTPN6P29350 595 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 GZMMP51124 257 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 PCDH1Q08174 1060 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 CSTF3Q12996 717 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 DAG1Q14118 895 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 RBBP5Q15291 538 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 ATL1Q8WXF7 558 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 TMBIM1Q969X1 311 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 RDH12Q96NR8 316 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 RIOK2Q9BVS4 552 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 MAGIXQ9H6Y5 334 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 DCAF13Q9NV06 445 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 FADS2P1A8MWK0 482 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 PRMT3O60678 531 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 SNAP29O95721 258 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 ALPLP05186 524 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 MTHFRP42898 656 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 MAPK9P45984 424 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 CHIT1Q13231 466 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 ZNF284Q2VY69 593 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 PRSS36Q5K4E3 855 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 RAVER1Q8IY67 606 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 SP7Q8TDD2 431 aaPredicted RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 CYB5D2Q8WUJ1 264 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 APIPQ96GX9 242 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 FBXL20Q96IG2 436 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 METTL2AQ96IZ6 378 aaKnown RBP14.65□□□□□ -0.06
LDLR-202ENST00000455727 MPP4Q96JB8 637 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 LIMD1Q9UGP4 676 aa14.65□□□□□ -0.06
LDLR-202ENST00000455727 WNT9AO14904 365 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 CTSLP07711 333 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 HNRNPA1P09651 372 aaKnown RBP eCLIP14.64□□□□□ -0.07
LDLR-202ENST00000455727 PRPS1L1P21108 318 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 TACR1P25103 407 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 MAP4P27816 1152 aaKnown RBP14.64□□□□□ -0.07
LDLR-202ENST00000455727 BMPR1AP36894 532 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 HALP42357 657 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 CDK9P50750 372 aaKnown RBP14.64□□□□□ -0.07
LDLR-202ENST00000455727 MTAPQ13126 283 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 DPY19L1Q2PZI1 675 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 TMEM214Q6NUQ4 689 aaKnown RBP14.64□□□□□ -0.07
LDLR-202ENST00000455727 NOXRED1Q6NXP6 359 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 CYP2U1Q7Z449 544 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 NRSN1Q8IZ57 195 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 MYLIPQ8WY64 445 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 GLMNQ92990 594 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 CCDC138Q96M89 665 aa14.64□□□□□ -0.07
LDLR-202ENST00000455727 CARS2Q9HA77 564 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms