RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 A0A1W2PPV9 198 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 HMX2A2RU54 273 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 POC1B-GALNT4F8VUJ3 575 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 CDC7O00311 574 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SLC16A5O15375 505 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 INHBAP08476 426 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 FOLR1P15328 257 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 IMPA1P29218 277 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 OAS2P29728 719 aaKnown RBP12.04□□□□□ -0.48
SKA1-203ENST00000417656 PNLIPRP1P54315 467 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 RAB15P59190 212 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 ERVPABLB-1P60509 514 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 HSD11B2P80365 405 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 TUBB3Q13509 450 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 TSTA3Q13630 321 aaPredicted RBP12.04□□□□□ -0.48
SKA1-203ENST00000417656 GPR19Q15760 415 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 MROH9Q5TGP6 573 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SUSD1Q6UWL2 747 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SBSNQ6UWP8 590 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 PROSER1Q86XN7 944 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SYTL1Q8IYJ3 562 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 D2HGDHQ8N465 521 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 KDF1Q8NAX2 398 aaPredicted RBP12.04□□□□□ -0.48
SKA1-203ENST00000417656 SNIP1Q8TAD8 396 aaKnown RBP12.04□□□□□ -0.48
SKA1-203ENST00000417656 ZNF480Q8WV37 535 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SLC44A1Q8WWI5 657 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 PDLIM5Q96HC4 596 aaKnown RBP12.04□□□□□ -0.48
SKA1-203ENST00000417656 OR6C1Q96RD1 312 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 TAAR9Q96RI9 348 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 DDA1Q9BW61 102 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SLC12A9Q9BXP2 914 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 PARVBQ9HBI1 364 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SYTL2Q9HCH5 934 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 ABCF3Q9NUQ8 709 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 STOX2Q9P2F5 926 aaPredicted RBP12.04□□□□□ -0.48
SKA1-203ENST00000417656 LNPEPQ9UIQ6 1025 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 KLHL20Q9Y2M5 609 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 RAXQ9Y2V3 346 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 PCDHGA7Q9Y5G6 932 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 B3GALT1Q9Y5Z6 326 aa12.04□□□□□ -0.48
SKA1-203ENST00000417656 SDK2Q58EX2 2172 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 ACACBO00763 2458 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 APC2O95996 2303 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 PABPN1LA6NDY0 278 aaKnown RBP12.03□□□□□ -0.48
SKA1-203ENST00000417656 TAF4O00268 1085 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 PRICKLE3O43900 615 aaPredicted RBP12.03□□□□□ -0.48
SKA1-203ENST00000417656 SLC35E2BP0CK96 405 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 MAGP20916 626 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 PCBP4P57723 403 aaKnown RBP12.03□□□□□ -0.48
SKA1-203ENST00000417656 TBPL1P62380 186 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 CSHL1Q14406 222 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 ARHGAP19Q14CB8 494 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 TSNQ15631 228 aaKnown RBP12.03□□□□□ -0.48
SKA1-203ENST00000417656 ZIC1Q15915 447 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 PPP1R3AQ16821 1122 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 ERCC6LQ2NKX8 1250 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 DEFB110Q30KQ9 67 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 DCAF12Q5T6F0 453 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 RAPH1Q70E73 1250 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 SPATA6LQ8N4H0 392 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 MCOLN3Q8TDD5 553 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 DCAKDQ8WVC6 231 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 SMPDL3AQ92484 453 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 SLC22A18Q96BI1 424 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 MIPEPQ99797 713 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 ACAT2Q9BWD1 397 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 DERL2Q9GZP9 239 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 FBXO8Q9NRD0 319 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 SNX15Q9NRS6 342 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 UTP6Q9NYH9 597 aaKnown RBP12.03□□□□□ -0.48
SKA1-203ENST00000417656 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.03□□□□□ -0.48
SKA1-203ENST00000417656 CTNNAL1Q9UBT7 734 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 TAC3Q9UHF0 121 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 PCDHGA3Q9Y5H0 932 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 IKBKGQ9Y6K9 419 aa12.03□□□□□ -0.48
SKA1-203ENST00000417656 ANKRD12Q6UB98 2062 aa12.02□□□□□ -0.48
SKA1-203ENST00000417656 MAP1BP46821 2468 aaKnown RBP12.02□□□□□ -0.48
SKA1-203ENST00000417656 ASPMQ8IZT6 3477 aa12.02□□□□□ -0.48
SKA1-203ENST00000417656 ZNF839A8K0R7 811 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 E7ENX8 843 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 POLR1CO15160 346 aaPredicted RBP12.02□□□□□ -0.49
SKA1-203ENST00000417656 NVLO15381 856 aaKnown RBP12.02□□□□□ -0.49
SKA1-203ENST00000417656 GUCA1CO95843 209 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 ENO2P09104 434 aaPredicted RBP12.02□□□□□ -0.49
SKA1-203ENST00000417656 CCDC166P0CW27 439 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 CD1DP15813 335 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 RPA3P35244 121 aaPredicted RBP12.02□□□□□ -0.49
SKA1-203ENST00000417656 HSD17B2P37059 387 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 MSH2P43246 934 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 SERPINB8P50452 374 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 TUBB4BP68371 445 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 IRF9Q00978 393 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 ACY1Q03154 408 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 TAP2Q03519 686 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 SLC29A2Q14542 456 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 SF1Q15637 639 aaKnown RBP12.02□□□□□ -0.49
SKA1-203ENST00000417656 TMTC4Q5T4D3 741 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 TMEM164Q5U3C3 297 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 KIAA1614Q5VZ46 1190 aa12.02□□□□□ -0.49
SKA1-203ENST00000417656 CEACAM20Q6UY09 585 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms