RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 GSDMBQ8TAX9 411 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 HMGCLL1Q8TB92 370 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 CD200R1Q8TD46 325 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 GPR21Q99679 349 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 AARSD1Q9BTE6 412 aaKnown RBP18.33■□□□□ 0.52
SF3A1-202ENST00000411423 GPR87Q9BY21 358 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 SLC25A18Q9H1K4 315 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 DHCR7Q9UBM7 475 aaKnown RBP18.33■□□□□ 0.52
SF3A1-202ENST00000411423 GCN1Q92616 2671 aaKnown RBP18.32■□□□□ 0.52
SF3A1-202ENST00000411423 E5RI56 91 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 PFDN6O15212 129 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 OR2B3O76000 313 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 NR1D1P20393 614 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 PGGT1BP53609 377 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 CYP2A13Q16696 494 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 C1orf189Q5VU69 101 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 FIGLAQ6QHK4 219 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 ZNF655Q8N720 491 aaPredicted RBP18.32■□□□□ 0.52
SF3A1-202ENST00000411423 OR2A1Q8NGT9 310 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 ADAMTS17Q8TE56 1095 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 APOBEC4Q8WW27 367 aaKnown RBP18.32■□□□□ 0.52
SF3A1-202ENST00000411423 KCNJ9Q92806 393 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 NDNQ99608 321 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 MIPEPQ99797 713 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 TRIM55Q9BYV6 548 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 ADNPQ9H2P0 1102 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 SYNPO2LQ9H987 977 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 EURLQ9NYK6 297 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 PLCL2Q9UPR0 1127 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 DHRS7Q9Y394 339 aa18.32■□□□□ 0.52
SF3A1-202ENST00000411423 MYO1CO00159 1063 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CTSVO60911 334 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CNOT3O75175 753 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 DNAJB5O75953 348 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 RECKO95980 971 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 KLK3P07288 261 aaPredicted RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 RAB40ALP0C0E4 278 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 ATXN8OSP0DMR3 200 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 ITGAXP20702 1163 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 MCM3P25205 808 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CCNFP41002 786 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 ELK3P41970 407 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 ITGA8P53708 1063 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 RPS15P62841 145 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 SF1Q15637 639 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 UGT8Q16880 541 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 RBM20Q5T481 1227 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CPZQ66K79 652 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 TRMT10BQ6PF06 316 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 PCGF5Q86SE9 256 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 SYVN1Q86TM6 617 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 PTRH1Q86Y79 214 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 MCATQ8IVS2 390 aaKnown RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CPNE9Q8IYJ1 553 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 DTWD1Q8N5C7 304 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 OR9A1PQ8NGU1 263 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 SLC22A18Q96BI1 424 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 ABHD17AQ96GS6 310 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 FOPNLQ96NB1 174 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 GBP5Q96PP8 586 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 PKP4Q99569 1192 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 FAM167BQ9BTA0 163 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 RAB11FIP5Q9BXF6 653 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 TRIM31Q9BZY9 425 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 SPATA7Q9P0W8 599 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.31■□□□□ 0.52
SF3A1-202ENST00000411423 CHMP2BQ9UQN3 213 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 POLHQ9Y253 713 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 VPS9D1Q9Y2B5 631 aa18.31■□□□□ 0.52
SF3A1-202ENST00000411423 ZSCAN9O15535 394 aaPredicted RBP18.3■□□□□ 0.52
SF3A1-202ENST00000411423 MAP3K7O43318 606 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 SEC31AO94979 1220 aaKnown RBP18.3■□□□□ 0.52
SF3A1-202ENST00000411423 CHAF1BQ13112 559 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 MORF4L2Q15014 288 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 SPANXN3Q5MJ09 141 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 RHBDD2Q6NTF9 364 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 TTC23LQ6PF05 361 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 SUSD1Q6UWL2 747 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 SYDE1Q6ZW31 735 aaPredicted RBP18.3■□□□□ 0.52
SF3A1-202ENST00000411423 PIWIL4Q7Z3Z4 852 aaKnown RBP18.3■□□□□ 0.52
SF3A1-202ENST00000411423 CNTN4Q8IWV2 1026 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 LMNTD2Q8IXW0 634 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 GPR135Q8IZ08 494 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 PPFIBP2Q8ND30 876 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 OR2L3Q8NG85 312 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 CALML6Q8TD86 181 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 DLG3Q92796 817 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 N4BP2L2Q92802 583 aaPredicted RBP18.3■□□□□ 0.52
SF3A1-202ENST00000411423 KRT12Q99456 494 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 NLNQ9BYT8 704 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 SLC6A20Q9NP91 592 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 ZNF71Q9NQZ8 489 aaPredicted RBP18.3■□□□□ 0.52
SF3A1-202ENST00000411423 SLC22A11Q9NSA0 550 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 TUBD1Q9UJT1 453 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 TCFL5Q9UL49 500 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 TEX264Q9Y6I9 313 aa18.3■□□□□ 0.52
SF3A1-202ENST00000411423 IGKV1-8A0A0C4DH67 115 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 CCDC188H7C350 402 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 MED26O95402 600 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 AHSGP02765 367 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms