RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TXNL4AP83876 142 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 FPGSQ05932 587 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 RAB39AQ14964 217 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 ARHGAP22Q7Z5H3 698 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 TMPRSS11BQ86T26 416 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 GPR180Q86V85 440 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 REXO4Q9GZR2 422 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 PTTG2Q9NZH5 202 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 MOSPD1Q9UJG1 213 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 BACE2Q9Y5Z0 518 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 ZNF821O75541 412 aaPredicted RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 ERVFC1P60507 584 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 ATP1A4Q13733 1029 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 ATP6AP1Q15904 470 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 HACD2Q6Y1H2 254 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 SLC39A5Q6ZMH5 540 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 TPRG1Q6ZUI0 275 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 R3HCC1LQ7Z5L2 792 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 TOP1MTQ969P6 601 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 MRGBPQ9NV56 204 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 OARD1Q9Y530 152 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 TCRBV5S2A0A599 114 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 E7EQ34 232 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 KCNAB2Q13303 367 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 APOFQ13790 326 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 PDE12Q6L8Q7 609 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 Q6ZPB1 254 aaPredicted RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 ISOC1Q96CN7 298 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 FAM83DQ9H4H8 585 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 SPASTQ9UBP0 616 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 AREL1O15033 823 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 RASAL1O95294 804 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 TGFB1P01137 390 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 CDK4P11802 303 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 GRASPQ7Z6J2 395 aaPredicted RBP13.03□□□□□ -0.32
VPS54-203ENST00000409558 MCOLN3Q8TDD5 553 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 ZSWIM3Q96MP5 696 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 IL17FQ96PD4 163 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 BRINP2Q9C0B6 783 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 KCTD5Q9NXV2 234 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 ACSL6Q9UKU0 697 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 PITPNM1O00562 1244 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 PRAMEF4O60810 478 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 PENKP01210 267 aaPredicted RBP13.03□□□□□ -0.32
VPS54-203ENST00000409558 OR1E2P47887 323 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 EEFSECP57772 596 aaKnown RBP13.03□□□□□ -0.32
VPS54-203ENST00000409558 TCEAL5Q5H9L2 206 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 PRAMEF9Q5VWM5 478 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 NECAB2Q7Z6G3 386 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 CFAP206Q8IYR0 622 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 ATG16L2Q8NAA4 619 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 SLC43A3Q8NBI5 491 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 FATE1Q969F0 183 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 TMEM159Q96B96 161 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 NTN4Q9HB63 628 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 MAGEL2Q9UJ55 1249 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 PCDHGA8Q9Y5G5 932 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 M0R129 80 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 C1SP09871 688 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 VIPR2P41587 438 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 LRRC74AQ0VAA2 488 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 PCBP2Q15366 365 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS54-203ENST00000409558 SMN1Q16637 294 aaKnown RBP13.03□□□□□ -0.32
VPS54-203ENST00000409558 SFTPA1Q8IWL2 248 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 MSRB3Q8IXL7 192 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 ACDQ96AP0 544 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 ZDHHC3Q9NYG2 299 aa13.03□□□□□ -0.32
VPS54-203ENST00000409558 CREG1O75629 220 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 PABPC1P11940 636 aaKnown RBP13.02□□□□□ -0.32
VPS54-203ENST00000409558 JAK1P23458 1154 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SOAT1P35610 550 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 ACSM2AQ08AH3 577 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 RAB33AQ14088 237 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 PON2Q15165 354 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SLC36A3Q495N2 470 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 ACSM2BQ68CK6 577 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 TPGS2Q68CL5 300 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 ZNF555Q8NEP9 628 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SPPL2AQ8TCT8 520 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 KLK6Q92876 244 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SEZ6LQ9BYH1 1024 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SLC32A1Q9H598 525 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 EPS8L2Q9H6S3 715 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 GALNT8Q9NY28 637 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 NDUFA13Q9P0J0 144 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 KIF17Q9P2E2 1029 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 PPT2Q9UMR5 302 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.02□□□□□ -0.32
VPS54-203ENST00000409558 LATO43561 262 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 PRR35P0CG20 571 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 RAP2AP10114 183 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SDC1P18827 310 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 EPHA2P29317 976 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 TMEM220Q6QAJ8 160 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 ZC3H7AQ8IWR0 971 aaKnown RBP13.02□□□□□ -0.32
VPS54-203ENST00000409558 SCRN2Q96FV2 425 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 OTUB1Q96FW1 271 aaPredicted RBP13.02□□□□□ -0.32
VPS54-203ENST00000409558 HTATIP2Q9BUP3 242 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 SORBS1Q9BX66 1292 aaKnown RBP13.02□□□□□ -0.32
VPS54-203ENST00000409558 PCDHGA11Q9Y5H2 935 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms