RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NRBF2Q96F24 287 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 OTUB1Q96FW1 271 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GPR78Q96P69 363 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PRR25Q96S07 402 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GPA33Q99795 319 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 JPH2Q9BR39 696 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ALG8Q9BVK2 526 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GTPBP2Q9BX10 602 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ATG10Q9H0Y0 220 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 NAPBQ9H115 298 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PIGMQ9H3S5 423 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 METTL7AQ9H8H3 244 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 BARX2Q9UMQ3 279 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ST3GAL5Q9UNP4 418 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ICKQ9UPZ9 632 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 FOXA2Q9Y261 457 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MRPS2Q9Y399 296 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM184BQ9Y519 407 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CEPT1Q9Y6K0 416 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TCRBV7S3A2A0A539 114 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 MACROD2A1Z1Q3 448 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 GSAPA4D1B5 854 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 WDR91A4D1P6 747 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 FAM90A10PA6NDY2 464 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 LINC00473A8K010 186 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 HSPB2A8KAH6 182 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 KBTBD13C9JR72 458 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 K7EQM0 130 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 TMPRSS11DO60235 418 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 ATP9AO75110 1047 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 MFN2O95140 757 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 YEATS4O95619 227 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 YES1P07947 543 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 UQCRFS1P1P0C7P4 283 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 PTBP1P26599 531 aaKnown RBP eCLIP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 RYKP34925 604 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 PTGER1P34995 402 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 LIPAP38571 399 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CCT6AP40227 531 aaKnown RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 SLC6A12P48065 614 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CNN1P51911 297 aaKnown RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 PROK1P58294 105 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 EIF3EP60228 445 aaKnown RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 SLC18A2Q05940 514 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 SPAG1Q07617 926 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 HSPB2Q16082 182 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 PDK4Q16654 411 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 ARL13AQ5H913 290 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 TBC1D9BQ66K14 1250 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 FBXO46Q6PJ61 603 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 ENPP7Q6UWV6 458 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 MAVSQ7Z434 540 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 LUZP1Q86V48 1076 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 IGFN1Q86VF2 1251 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 FOXP4Q8IVH2 680 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 KLHDC8AQ8IYD2 350 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CADM3Q8N126 398 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 GALNT16Q8N428 558 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 MINDY2Q8NBR6 621 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 LEMD2Q8NC56 503 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 HUS1BQ8NHY5 278 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 BBS10Q8TAM1 723 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 PIGKQ92643 395 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 AKAP1Q92667 903 aaKnown RBP eCLIP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 SYN2Q92777 582 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 ESAMQ96AP7 390 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 R3HDM4Q96D70 268 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 DHTKD1Q96HY7 919 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 PBKQ96KB5 322 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 RPGRIP1Q96KN7 1286 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 ATP6V1G3Q96LB4 118 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF607Q96SK3 696 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CPNE1Q99829 537 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 GAL3ST1Q99999 423 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 MMTAG2Q9BU76 263 aaKnown RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 GON7Q9BXV9 100 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 RNF26Q9BY78 433 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 TSPYL1Q9H0U9 437 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 HIPK3Q9H422 1215 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 EXO5Q9H790 373 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 MAGEF1Q9HAY2 307 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 TXNRD2Q9NNW7 524 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 BPIFA1Q9NP55 256 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 AGPAT5Q9NUQ2 364 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 TBC1D13Q9NVG8 400 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CNOT2Q9NZN8 540 aaKnown RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CHRNA9Q9UGM1 479 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 CCNL1Q9UK58 526 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 HBS1LQ9Y450 684 aaKnown RBP3.97□□□□□ -1.77
HMGB1-204ENST00000399489 SLC4A4Q9Y6R1 1079 aa3.97□□□□□ -1.77
HMGB1-204ENST00000399489 FEZF1A0PJY2 475 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 C17orf102A2RUQ5 167 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ACOD1A6NK06 481 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 EBAG9O00559 213 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 AP5Z1O43299 807 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF254O75437 659 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 ECI2O75521 394 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 GCATO75600 419 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 FLOT1O75955 427 aa3.96□□□□□ -1.78
HMGB1-204ENST00000399489 SMC2O95347 1197 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms