RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 SRPK3Q9UPE1 567 aa12.91□□□□□ -0.34
VCX3A-202ENST00000398729 TP53TG5Q9Y2B4 290 aa12.91□□□□□ -0.34
VCX3A-202ENST00000398729 PADI2Q9Y2J8 665 aa12.91□□□□□ -0.34
VCX3A-202ENST00000398729 NEU2Q9Y3R4 380 aa12.91□□□□□ -0.34
VCX3A-202ENST00000398729 E5RI56 91 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 H3BMH7 237 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 HCRTR1O43613 425 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 NIPSNAP2O75323 286 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 SNRNP200O75643 2136 aaKnown RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 FKBP9O95302 570 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 CAPN1P07384 714 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 ATP5DP30049 168 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 BDKRB1P46663 353 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 FNTAP49354 379 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 MLLT10P55197 1068 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 THOC5Q13769 683 aaKnown RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 ANKRD20A4Q4UJ75 823 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 ZNF385CQ66K41 422 aaPredicted RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 CNSTQ6PJW8 725 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 CENPUQ71F23 418 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 ZNF655Q8N720 491 aaPredicted RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 FAM136AQ96C01 138 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 DHRS4Q9BTZ2 278 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 LRRC4CQ9HCJ2 640 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 ACSS2Q9NR19 701 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 TXLNGQ9NUQ3 528 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 INTS10Q9NVR2 710 aaKnown RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 TRMT1Q9NXH9 659 aaKnown RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 SNX12Q9UMY4 172 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 RUVBL2Q9Y230 463 aaKnown RBP12.9□□□□□ -0.34
VCX3A-202ENST00000398729 NFS1Q9Y697 457 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 CSMD1Q96PZ7 3565 aa12.9□□□□□ -0.34
VCX3A-202ENST00000398729 CTAGE9A4FU28 777 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ARGFXA6NJG6 315 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 CES2O00748 559 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 DNAJB5O75953 348 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 MATN4O95460 622 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 CD63P08962 238 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 CBSLP0DN79 551 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 PKMP14618 531 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 NR1D1P20393 614 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 CBSP35520 551 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 PTGIRP43119 386 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 DCDP81605 110 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 KLRB1Q12918 225 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 GBX1Q14549 363 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 PPP1R7Q15435 360 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ZC3H12BQ5HYM0 836 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 C1orf189Q5VU69 101 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 CPZQ66K79 652 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ZNF470Q6ECI4 717 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ASB18Q6ZVZ8 466 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 MCATQ8IVS2 390 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 PPIL6Q8IXY8 311 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ZBTB2Q8N680 514 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 NAT8LQ8N9F0 302 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 LMNTD1Q8N9Z9 388 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 HMGCLL1Q8TB92 370 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ADAMTS17Q8TE56 1095 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 DLG3Q92796 817 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 GBP5Q96PP8 586 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 TRIM56Q9BRZ2 755 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 NDC1Q9BTX1 674 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 TRIM55Q9BYV6 548 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ING2Q9H160 280 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 CCDC68Q9H2F9 335 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 EURLQ9NYK6 297 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 IL1RAPL1Q9NZN1 696 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 DHCR7Q9UBM7 475 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 GPN3Q9UHW5 284 aaPredicted RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 TSR3Q9UJK0 312 aaKnown RBP12.89□□□□□ -0.35
VCX3A-202ENST00000398729 KLHL20Q9Y2M5 609 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 MAD1L1Q9Y6D9 718 aa12.89□□□□□ -0.35
VCX3A-202ENST00000398729 ZCWPW2A0A1B0GU75 182 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 TARM1B6A8C7 271 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 ZNF185O15231 689 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 USP1O94782 785 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 CTSBP07858 339 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 MAGEA3P43357 314 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 CCL11P51671 97 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 CHAF1BQ13112 559 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 LONRF1Q17RB8 773 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 TTLL9Q3SXZ7 439 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 CCSMST1Q4G0I0 132 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 ACSBG2Q5FVE4 666 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 FAM69BQ5VUD6 431 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 MLIPQ5VWP3 458 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 FIGLAQ6QHK4 219 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 RAB43Q86YS6 212 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 LMNTD2Q8IXW0 634 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 TEX19Q8NA77 164 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 CALML6Q8TD86 181 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 DENND1AQ8TEH3 1009 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 ZUFSPQ96AP4 578 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 SLC25A23Q9BV35 468 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 KCNF1Q9H3M0 494 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 SPATA7Q9P0W8 599 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 IFT80Q9P2H3 777 aaPredicted RBP12.88□□□□□ -0.35
VCX3A-202ENST00000398729 NDOR1Q9UHB4 597 aa12.88□□□□□ -0.35
VCX3A-202ENST00000398729 ABCA12Q86UK0 2595 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms