RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 IL1RAPL1Q9NZN1 696 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 GALPQ9UBC7 116 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 DHCR7Q9UBM7 475 aaKnown RBP20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 PCDHGA9Q9Y5G4 932 aaKnown RBP20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 TENM4Q6N022 2769 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 ZCWPW2A0A1B0GU75 182 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 CES2O00748 559 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 CCL11P51671 97 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 MLIPQ5VWP3 458 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 NAT8LQ8N9F0 302 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 TEX19Q8NA77 164 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 DENND1AQ8TEH3 1009 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 GRK7Q8WTQ7 553 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 ZUFSPQ96AP4 578 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 NDC1Q9BTX1 674 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 SLC25A23Q9BV35 468 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 MLXIPLQ9NP71 852 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 TXLNGQ9NUQ3 528 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 SPATA7Q9P0W8 599 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 SNX12Q9UMY4 172 aa20.85■□□□□ 0.93
CCDC28B-201ENST00000373602 MYO18BQ8IUG5 2567 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 GOLGA6L10A0A0M3HER8 536 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 KRT87PA6NCN2 255 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 CD63P08962 238 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 THOC5Q13769 683 aaKnown RBP20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 ACSBG2Q5FVE4 666 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 ZC3H12BQ5HYM0 836 aaKnown RBP20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 PAPD7Q5XG87 772 aaKnown RBP20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 ZNF470Q6ECI4 717 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 RAB43Q86YS6 212 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 AGGF1Q8N302 714 aaeCLIP20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 TMEM102Q8N9M5 508 aaPredicted RBP20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 SIGLEC10Q96LC7 697 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 KCNF1Q9H3M0 494 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 ENAMQ9NRM1 1142 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 GPN3Q9UHW5 284 aaPredicted RBP20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 KLK4Q9Y5K2 254 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 MED13Q9UHV7 2174 aa20.84■□□□□ 0.93
CCDC28B-201ENST00000373602 CTAGE9A4FU28 777 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 TARM1B6A8C7 271 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 E5RI56 91 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 KIF5CO60282 957 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 CEACAM4O75871 244 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 USP1O94782 785 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 GRIA3P42263 894 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 PGDP52209 483 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 ARSFP54793 590 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 FOXK1P85037 733 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 SSPNQ14714 243 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 CYP2A13Q16696 494 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 NKAIN1Q4KMZ8 207 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 COLEC12Q5KU26 742 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 MRPL14Q6P1L8 145 aaKnown RBP20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 DENND6AQ8IWF6 608 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 PPIL6Q8IXY8 311 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 DLG3Q92796 817 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 ZNF285Q96NJ3 590 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 IFT80Q9P2H3 777 aaPredicted RBP20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 NDOR1Q9UHB4 597 aa20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 TSR3Q9UJK0 312 aaKnown RBP20.83■□□□□ 0.93
CCDC28B-201ENST00000373602 A0A1W2PPV9 198 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 ZNF185O15231 689 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 PSIP1O75475 530 aaKnown RBP20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 PSMB5P28074 263 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 CLCN7P51798 805 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 RRADP55042 308 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 CTBP1Q13363 440 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 ATP1A4Q13733 1029 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 KLHL38Q2WGJ6 581 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 TCTE1Q5JU00 501 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 MED25Q71SY5 747 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 LMNTD2Q8IXW0 634 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 OR2L3Q8NG85 312 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 OR2A1Q8NGT9 310 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 OR9A1PQ8NGU1 263 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 IP6K3Q96PC2 410 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 FBXO6Q9NRD1 293 aaPredicted RBP20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 TRMT1Q9NXH9 659 aaKnown RBP20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 KLHL42Q9P2K6 505 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 MED16Q9Y2X0 877 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 PTRH2Q9Y3E5 179 aaKnown RBP20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 MAD1L1Q9Y6D9 718 aa20.82■□□□□ 0.92
CCDC28B-201ENST00000373602 ARHGEF33A8MVX0 844 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 CNOT3O75175 753 aaKnown RBP20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 F7P08709 466 aaPredicted RBP20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 ERGP11308 486 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 ALAS2P22557 587 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 OTX2P32243 289 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 FOLR3P41439 243 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 FASTKQ14296 549 aaKnown RBP20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 SLC9A5Q14940 896 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 LONRF1Q17RB8 773 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 RNASEH2BQ5TBB1 312 aaKnown RBP20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 YOD1Q5VVQ6 348 aaPredicted RBP20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 ZNF549Q6P9A3 640 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 TTLL10Q6ZVT0 673 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 NEK10Q6ZWH5 1172 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 OR2Y1Q8NGV0 311 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 CALML6Q8TD86 181 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms