RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 GALNT13Q8IUC8 556 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 TMEM132CQ8N3T6 1108 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 MCFD2Q8NI22 146 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 STARD8Q92502 1023 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 ACPTQ9BZG2 426 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 KCNH6Q9H252 994 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 POU2F3Q9UKI9 436 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 ALPIP09923 528 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 TACR1P25103 407 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 CPSF6Q16630 551 aaKnown RBP eCLIP15.98■□□□□ 0.15
SDC4-201ENST00000372733 DOK6Q6PKX4 331 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 VTCN1Q7Z7D3 282 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 SERPINA9Q86WD7 417 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 SLC22A15Q8IZD6 547 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 CARNMT1Q8N4J0 409 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 SVOPQ8N4V2 548 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 TRPV1Q8NER1 839 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 ZHX1-C8orf76Q96EF9 292 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 GPR63Q9BZJ6 419 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 RMND5AQ9H871 391 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 PARVBQ9HBI1 364 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 ZBTB20Q9HC78 741 aaPredicted RBP15.98■□□□□ 0.15
SDC4-201ENST00000372733 PDP1Q9P0J1 537 aaPredicted RBP15.98■□□□□ 0.15
SDC4-201ENST00000372733 IL17CQ9P0M4 197 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 OSGIN1Q9UJX0 560 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 PPT2Q9UMR5 302 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 AP3M1Q9Y2T2 418 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 PCDHB9Q9Y5E1 797 aa15.98■□□□□ 0.15
SDC4-201ENST00000372733 EFCAB9A8MZ26 197 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 HOXB9P17482 250 aaPredicted RBP15.97■□□□□ 0.15
SDC4-201ENST00000372733 IL1RNP18510 177 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 SERPINB1P30740 379 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 GSSP48637 474 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 ALDH7A1P49419 539 aaKnown RBP15.97■□□□□ 0.15
SDC4-201ENST00000372733 CDH4P55283 916 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 SYT16Q17RD7 645 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 COLEC12Q5KU26 742 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 C9orf131Q5VYM1 1079 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 PRSS48Q7RTY5 328 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 ARMC8Q8IUR7 673 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 DENND1CQ8IV53 801 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 RHOXF1Q8NHV9 184 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 APOL4Q9BPW4 351 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 ASIC5Q9NY37 505 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 OR2A25A4D2G3 310 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 WNT9AO14904 365 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 AKR1A1P14550 325 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 RGS4P49798 205 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 PPP5CP53041 499 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 CXCR4P61073 352 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 VLDLRP98155 873 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 ABHD18Q0P651 414 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 CLLU1OSQ5K130 101 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 GLB1LQ6UWU2 654 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 C16orf59Q7L2K0 433 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 RASAL3Q86YV0 1011 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 SLC7A5P1Q8MH63 180 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 DCSTAMPQ9H295 470 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 KIF17Q9P2E2 1029 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 TRPS1Q9UHF7 1281 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 NDRG4Q9ULP0 352 aaKnown RBP15.97■□□□□ 0.15
SDC4-201ENST00000372733 MAN2B2Q9Y2E5 1009 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 PCDHB1Q9Y5F3 818 aa15.97■□□□□ 0.15
SDC4-201ENST00000372733 SLC25A14O95258 325 aaPredicted RBP15.96■□□□□ 0.15
SDC4-201ENST00000372733 PRAMEF1O95521 474 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 SEPHS1P49903 392 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 DSC1Q08554 894 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 SMU1Q2TAY7 513 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 C5orf22Q49AR2 442 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 FAM171A1Q5VUB5 890 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 ZNF513Q8N8E2 541 aaPredicted RBP15.96■□□□□ 0.15
SDC4-201ENST00000372733 TRIB2Q92519 343 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 USP7Q93009 1102 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 TM9SF3Q9HD45 589 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 IL1RAPQ9NPH3 570 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 SIRT5Q9NXA8 310 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 SAMD4AQ9UPU9 718 aaKnown RBP15.96■□□□□ 0.15
SDC4-201ENST00000372733 ERVW-1Q9UQF0 538 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 SAMHD1Q9Y3Z3 626 aaKnown RBP15.96■□□□□ 0.15
SDC4-201ENST00000372733 BRCA2P51587 3418 aa15.96■□□□□ 0.15
SDC4-201ENST00000372733 TBX1O43435 398 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 WBP4O75554 376 aaKnown RBP15.96■□□□□ 0.14
SDC4-201ENST00000372733 WDR47O94967 919 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 PDYNP01213 254 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 RCVRNP35243 200 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 ARF5P84085 180 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 CREMQ03060 361 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 PRSS36Q5K4E3 855 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 ZCCHC8Q6NZY4 707 aaKnown RBP15.96■□□□□ 0.14
SDC4-201ENST00000372733 HORMAD1Q86X24 394 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 LYSMD2Q8IV50 215 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 ATG16L2Q8NAA4 619 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 SIAEQ9HAT2 523 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 KRT84Q9NSB2 600 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 HSPE1-MOB4S4R3N1 261 aa15.96■□□□□ 0.14
SDC4-201ENST00000372733 PCDHGA12O60330 932 aa15.95■□□□□ 0.14
SDC4-201ENST00000372733 UPK1BO75841 260 aa15.95■□□□□ 0.14
SDC4-201ENST00000372733 CCNDBP1O95273 360 aa15.95■□□□□ 0.14
SDC4-201ENST00000372733 VNN2O95498 520 aa15.95■□□□□ 0.14
SDC4-201ENST00000372733 EPB42P16452 691 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms