RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SPRED1Q7Z699 444 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 GPSM1Q86YR5 675 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 LSMEM2Q8N112 164 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MYO1HQ8N1T3 1032 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 ANKRD42Q8N9B4 389 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 OR9A1PQ8NGU1 263 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 OR6Y1Q8NGX8 325 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 OR10G6Q8NH81 332 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 IFI44Q8TCB0 444 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CXorf40BQ96DE9 158 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CNDP2Q96KP4 475 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 TRAPPC9Q96Q05 1148 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 ABCG4Q9H172 646 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 SEMA6CQ9H3T2 930 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TFB2MQ9H5Q4 396 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 KCNK9Q9NPC2 374 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 HRASLS2Q9NWW9 162 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 FAM53CQ9NYF3 392 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 OARD1Q9Y530 152 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MDC1Q14676 2089 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 A0A087X1B8 175 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KIR2DS5A0A0G2JLQ3 304 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 A0A0G2JNG1 304 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CCDC189A1A4V9 331 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 A8MU76 341 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KIR2DS3K7RE56 304 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 IFRD1O00458 451 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 E2F3O00716 465 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 COPEO14579 308 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 LCMT2O60294 686 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 KERAO60938 352 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CHRNGP07510 517 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 ZNF883P0CG24 379 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MAPK9P45984 424 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 ACADVLP49748 655 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KPNA2P52292 529 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 NAGLUP54802 743 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KCNAB1Q14722 419 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KIR2DS5Q14953 304 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 UNC50Q53HI1 259 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TTC23LQ6PF05 361 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 DHRS13Q6UX07 377 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 RIPOR1Q6ZS17 1223 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 FAM92BQ6ZTR7 304 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 NEK10Q6ZWH5 1172 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TAOK1Q7L7X3 1001 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 EFL1Q7Z2Z2 1120 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 AMIGO1Q86WK6 493 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 AMER2Q8N7J2 671 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 PTGR2Q8N8N7 351 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 RHEBL1Q8TAI7 183 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 STAG3L4Q8TBR4 150 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MAPK15Q8TD08 544 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 LCN9Q8WX39 176 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 NCSTNQ92542 709 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 NEIL2Q969S2 332 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TSPAN17Q96FV3 270 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 APOPT1Q96IL0 206 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 SCYL1Q96KG9 808 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MAP3K3Q99759 626 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MIPEPQ99797 713 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TSSK1BQ9BXA7 367 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 IQCGQ9H095 443 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 COPG2Q9UBF2 871 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 RNF112Q9ULX5 631 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 H7BY64 318 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 OR7A17O14581 309 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KPNA5O15131 536 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CAPN5O15484 640 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 CTSVO60911 334 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KCNJ13O60928 360 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 LRP3O75074 770 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 LYPLA1O75608 230 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 UBXN7O94888 489 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CHRM5P08912 532 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 FGF3P11487 239 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 ENO3P13929 434 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 ST6GAL1P15907 406 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 VARSP26640 1264 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 SLC26A3P40879 764 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 HALP42357 657 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 GRK6P43250 576 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 SLC6A12P48065 614 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 CCT5P48643 541 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 PIK3CGP48736 1102 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 RGS4P49798 205 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 SH3BP2P78314 561 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 SLC14A1Q13336 389 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TRIP6Q15654 476 aaKnown RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 CYP2A13Q16696 494 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TTLL9Q3SXZ7 439 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 TCHHL1Q5QJ38 904 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 SNAP47Q5SQN1 464 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 RABEPKQ7Z6M1 372 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 RIBC1Q8N443 379 aaPredicted RBP3.89□□□□□ -1.79
LIG4-201ENST00000356922 CCDC63Q8NA47 563 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 ACMSDQ8TDX5 336 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 MED8Q96G25 268 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 PRAP1Q96NZ9 151 aa3.89□□□□□ -1.79
LIG4-201ENST00000356922 KCNA7Q96RP8 456 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms