RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF234Q14588 700 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF311Q5JNZ3 666 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 PPTC7Q8NI37 304 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 DNASE1L2Q92874 299 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 PYCR2Q96C36 320 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 SPACA7Q96KW9 195 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 FERD3LQ96RJ6 166 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 KCNA7Q96RP8 456 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 WACQ9BTA9 647 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 FZD8Q9H461 694 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 THUMPD1Q9NXG2 353 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 FLRT1Q9NZU1 646 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF541Q9H0D2 1346 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 A0A1W2PQ67 120 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 NFKB2Q00653 900 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF267Q14586 743 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 HEPACAMQ14CZ8 416 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 TAF1AQ15573 450 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 SCML4Q8N228 414 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 CHST4Q8NCG5 386 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 SMIM35A0A1B0GVV1 85 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 SLITRK5O94991 958 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 MAGEA2P43356 314 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 KIAA1614Q5VZ46 1190 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 SERPINA13PQ6UXR4 307 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 TOMM5Q8N4H5 51 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 CDKN2AIPNLQ96HQ2 116 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 IMP3Q9NV31 184 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 FZD4Q9ULV1 537 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 PCDHGA4Q9Y5G9 962 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 ACSL4O60488 711 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 T-ENOLP0DO92 83 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 PRKAR2AP13861 404 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 CLCNKBP51801 687 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 RFTN1Q14699 578 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 CBX2Q14781 532 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 PQLC3Q8N755 202 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 TXNDC5Q8NBS9 432 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 TSEN15Q8WW01 171 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 NCKAP1Q9Y2A7 1128 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 PLIN4Q96Q06 1357 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 E7ESA3 106 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 CDC7O00311 574 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 SDHDO14521 159 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 ENPP3O14638 875 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 DIO3P55073 304 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 SCARB2Q14108 478 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 SPANXN4Q5MJ08 99 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 TBX5Q99593 518 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 GAL3ST1Q99999 423 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 SPATA7Q9P0W8 599 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 KIAA1522Q9P206 1035 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 MSCO60682 206 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 PQBP1O60828 265 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 RPS3P23396 243 aaKnown RBP eCLIP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 OR1D2P34982 312 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 ZDHHC20Q5W0Z9 365 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 GATA6Q92908 595 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 SNX27Q96L92 541 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 FAM83DQ9H4H8 585 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 GPSM3Q9Y4H4 160 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 A0A075B6Q4 140 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 NT5C1B-RDH14C9J2C7 533 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 PDPK1O15530 556 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 HLCSP50747 726 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 ABHD18Q0P651 414 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 FAM91A1Q658Y4 838 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 ZC3H3Q8IXZ2 948 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 CEP76Q8TAP6 659 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 RDH12Q96NR8 316 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 PKP4Q99569 1192 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 ADAMTS10Q9H324 1103 aa19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF142P52746 1687 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-202ENST00000356786 KDM3BQ7LBC6 1761 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 SMIM30A4D0T7 59 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 LMO3Q8TAP4 145 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 TTLL2Q9BWV7 592 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 POLR3BQ9NW08 1133 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 RYKP34925 604 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 ADAM8P78325 824 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 RBBP4Q09028 425 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 ELMOD2Q8IZ81 293 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 OR4C6Q8NH72 309 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 ZC3H10Q96K80 434 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 TXLNGYQ9BZA5 131 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 PAK1IP1Q9NWT1 392 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 MAU2Q9Y6X3 613 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 COL1A2P08123 1366 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 MCIDASD6RGH6 385 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 SCRN3Q0VDG4 424 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC39A4Q6P5W5 647 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 CCBE1Q6UXH8 406 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 USP50Q70EL3 339 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 ACBD6Q9BR61 282 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 SMOXQ9NWM0 555 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 PHF24Q9UPV7 400 aa19.09■□□□□ 0.65
CCDC88B-202ENST00000356786 PRODHO43272 600 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 PIGRP01833 764 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 GSTT2BP0CG30 244 aa19.08■□□□□ 0.65
CCDC88B-202ENST00000356786 DNAJB1P25685 340 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms