RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ENTPD2Q9Y5L3 495 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 PABPN1LA6NDY0 278 aaKnown RBP21.41■■□□□ 1.02
SHMT1-203ENST00000354098 PRICKLE3O43900 615 aaPredicted RBP21.41■■□□□ 1.02
SHMT1-203ENST00000354098 COL6A2P12110 1019 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 UGT2B7P16662 529 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 PSMB5P28074 263 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 LSSP48449 732 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 INHBCP55103 352 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 TSTA3Q13630 321 aaPredicted RBP21.41■■□□□ 1.02
SHMT1-203ENST00000354098 AGTRAPQ6RW13 159 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 TMPRSS7Q7RTY8 843 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 ACMSDQ8TDX5 336 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 EXT2Q93063 718 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 DEPDC7Q96QD5 511 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 ATOH8Q96SQ7 321 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 ABCF3Q9NUQ8 709 aa21.41■■□□□ 1.02
SHMT1-203ENST00000354098 RASSF9O75901 435 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 HSD17B2P37059 387 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 KIR2DS3Q14952 304 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 C18orf21Q32NC0 220 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-203ENST00000354098 KLC3Q6P597 504 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 LRIG3Q6UXM1 1119 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 TRIM73Q86UV7 250 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 CNPY4Q8N129 248 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 TMEM74Q96NL1 305 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 SPTBN2O15020 2390 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 UQCRHLA0A096LP55 91 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 IGHV5-51A0A0C4DH38 117 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 MATN2O00339 956 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 KERAO60938 352 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 UQCRHP07919 91 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 YBX1P67809 324 aaKnown RBP21.4■■□□□ 1.02
SHMT1-203ENST00000354098 CDKL1Q00532 357 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 TECRLQ5HYJ1 363 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 CACHD1Q5VU97 1274 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 SPESP1Q6UW49 350 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 ARHGAP22Q7Z5H3 698 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 TRABD2AQ86V40 505 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 C4orf33Q8N1A6 199 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 GALNT15Q8N3T1 639 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 RHEBL1Q8TAI7 183 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 SMPDL3AQ92484 453 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 FBXL8Q96CD0 374 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 EGFL8Q99944 293 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 ACAT2Q9BWD1 397 aa21.4■■□□□ 1.02
SHMT1-203ENST00000354098 UBXN8O00124 270 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 ANXA5P08758 320 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 PVRP15151 417 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 KRT4P19013 534 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 SPINK2P20155 84 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 CCKBRP32239 447 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 SEPHS1P49903 392 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 NAE1Q13564 534 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 C16orf72Q14CZ0 275 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 TSNAXIP1Q2TAA8 658 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 FBXO48Q5FWF7 155 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 OR2A1Q8NGT9 310 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 ALKBH8Q96BT7 664 aaKnown RBP21.39■■□□□ 1.01
SHMT1-203ENST00000354098 PYCR2Q96C36 320 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 RHBDF1Q96CC6 855 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 MED8Q96G25 268 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 SCYL1Q96KG9 808 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 KLHL25Q9H0H3 589 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 CD274Q9NZQ7 290 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 TMEM216Q9P0N5 145 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 WASF3Q9UPY6 502 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 PTPRBP23467 1997 aa21.39■■□□□ 1.01
SHMT1-203ENST00000354098 ANKRD12Q6UB98 2062 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 ZNF839A8K0R7 811 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 MTHFD2P13995 350 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 CDH3P22223 829 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 OAS2P29728 719 aaKnown RBP21.38■■□□□ 1.01
SHMT1-203ENST00000354098 TBPL1P62380 186 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 SF1Q15637 639 aaKnown RBP21.38■■□□□ 1.01
SHMT1-203ENST00000354098 C16orf46Q6P387 395 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 CDHR3Q6ZTQ4 885 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 SRRM1Q8IYB3 904 aaKnown RBP21.38■■□□□ 1.01
SHMT1-203ENST00000354098 CACTIN-AS1Q8N1I8 211 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 TSNARE1Q96NA8 513 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 CD180Q99467 661 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 CENPHQ9H3R5 247 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 XPR1Q9UBH6 696 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 KLHL20Q9Y2M5 609 aa21.38■■□□□ 1.01
SHMT1-203ENST00000354098 TLCD2A6NGC4 264 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 SUPT3HB4E1H0 165 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 TAPBPO15533 448 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 PRAMEF10O60809 474 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 SUPT3HO75486 399 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 PRSS42Q7Z5A4 293 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 TMEM151AQ8N4L1 468 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 ATL1Q8WXF7 558 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 ESAMQ96AP7 390 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 SLC22A18Q96BI1 424 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 MIPEPQ99797 713 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 PITPNM3Q9BZ71 974 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 INTS7Q9NVH2 962 aaKnown RBP21.37■■□□□ 1.01
SHMT1-203ENST00000354098 CPSF2Q9P2I0 782 aaKnown RBP21.37■■□□□ 1.01
SHMT1-203ENST00000354098 TAC3Q9UHF0 121 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 KLK13Q9UKR3 277 aa21.37■■□□□ 1.01
SHMT1-203ENST00000354098 A0A1W2PNU3 283 aaPredicted RBP21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms