RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 BDKRB1P46663 353 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 IDH3AP50213 366 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 AP3S2P59780 193 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 SCN1BQ07699 218 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 SCARB2Q14108 478 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 IFI44LQ53G44 452 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 AAGABQ6PD74 315 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 ZNF676Q8N7Q3 588 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 RIOK2Q9BVS4 552 aaKnown RBP12.37□□□□□ -0.43
SDC3-201ENST00000336798 SLC25A51Q9H1U9 297 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 MKKSQ9NPJ1 570 aaPredicted RBP12.37□□□□□ -0.43
SDC3-201ENST00000336798 PLEKHA6Q9Y2H5 1048 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PCDHB11Q9Y5F2 797 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 BTNL10A8MVZ5 291 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 B4GALT2O60909 372 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 TGDSO95455 350 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 SLC1A2P43004 574 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 S100A10P60903 97 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 CREB5Q02930 508 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 SLC9A4Q6AI14 798 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 MON1BQ7L1V2 547 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 ZNF101Q8IZC7 436 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 TRIM43Q96BQ3 446 aaPredicted RBP12.37□□□□□ -0.43
SDC3-201ENST00000336798 ADAD1Q96M93 576 aaKnown RBP12.37□□□□□ -0.43
SDC3-201ENST00000336798 FABP12A6NFH5 140 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 J3QRK9 145 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 KDM4BO94953 1096 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PRAMEF12O95522 483 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 CDKN2BP42772 138 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 NFKB2Q00653 900 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 SLC10A7Q0GE19 358 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 P2RY8Q86VZ1 359 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 MPP5Q8N3R9 675 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PLA2G15Q8NCC3 412 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PPM1HQ9ULR3 514 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 FZD10Q9ULW2 581 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PCDHGB5Q9Y5G0 923 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 DIP2BQ9P265 1576 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 RB1P06400 928 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 KLK1P06870 262 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 MMP8P22894 467 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 MAGEA12P43365 314 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 GPM6BQ13491 265 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 ZNF782Q6ZMW2 699 aaPredicted RBP12.37□□□□□ -0.43
SDC3-201ENST00000336798 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.37□□□□□ -0.43
SDC3-201ENST00000336798 LMX1AQ8TE12 382 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 UPB1Q9UBR1 384 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 NOL4O94818 638 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 AGXTP21549 392 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CERS6Q6ZMG9 384 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 PHC3Q8NDX5 983 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 DUSP26Q9BV47 211 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 TMED9Q9BVK6 235 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 SLC6A15Q9H2J7 730 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 WDR26Q9H7D7 661 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 MOV10Q9HCE1 1003 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 HPF1Q9NWY4 346 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 VNN3Q9NY84 501 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 STXBP5LQ9Y2K9 1186 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 OR2AT4A6NND4 320 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 PPP1R11O60927 126 aaPredicted RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 RPS14P62263 151 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 RPS24P62847 133 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 SLBPQ14493 270 aaKnown RBP eCLIP12.36□□□□□ -0.43
SDC3-201ENST00000336798 GXYLT1Q4G148 440 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 TNFAIP8L3Q5GJ75 292 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ABHD13Q7L211 337 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 PTF1AQ7RTS3 328 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ANKRD23Q86SG2 305 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 DENND6BQ8NEG7 585 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ASB12Q8WXK4 309 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 PLD4Q96BZ4 506 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CALML5Q9NZT1 146 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ZNF69Q9UC07 566 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 SETBP1Q9Y6X0 1596 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 SMIM30A4D0T7 59 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 ADAMDEC1O15204 470 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CLEC3AO75596 197 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 USP2O75604 605 aaPredicted RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 GBAP04062 536 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 C8GP07360 202 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CCNFP41002 786 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 DBF4BQ8NFT6 615 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 THEM6Q8WUY1 208 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 NODALQ96S42 347 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 HEBP2Q9Y5Z4 205 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 A0A1W2PRB8 838 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CLCN4P51793 760 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 LILRA4P59901 499 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 RPP38P78345 283 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 TAF1AQ15573 450 aaPredicted RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 PDCD4Q53EL6 469 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 PRPF38BQ5VTL8 546 aaKnown RBP12.36□□□□□ -0.43
SDC3-201ENST00000336798 TMEM53Q6P2H8 277 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 DLK2Q6UY11 383 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 CLNKQ7Z7G1 428 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 TMEM156Q8N614 296 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 MAGEH1Q9H213 219 aa12.36□□□□□ -0.43
SDC3-201ENST00000336798 IL1RAPQ9NPH3 570 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms