RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 H2AFJQ9BTM1 129 aa15.34■□□□□ 0.05
CCDC28A-201ENST00000332797 TWSG1Q9GZX9 223 aa15.34■□□□□ 0.05
CCDC28A-201ENST00000332797 APMAPQ9HDC9 416 aa15.34■□□□□ 0.05
CCDC28A-201ENST00000332797 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-201ENST00000332797 HMX2A2RU54 273 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 C9orf172C9J069 976 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 CDC7O00311 574 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 MAP3K7O43318 606 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 WISP3O95389 354 aaPredicted RBP15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 FOLR1P15328 257 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 IMPA1P29218 277 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 CRABP2P29373 138 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 OAS2P29728 719 aaKnown RBP15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 SLC5A2P31639 672 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 RAB15P59190 212 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 ERVPABLB-1P60509 514 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 SLC29A2Q14542 456 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 SF1Q15637 639 aaKnown RBP15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 TMTC4Q5T4D3 741 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 DCAF12Q5T6F0 453 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 SUSD1Q6UWL2 747 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 CLEC14AQ86T13 490 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 D2HGDHQ8N465 521 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 C19orf47Q8N9M1 422 aaKnown RBP15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 UBLCP1Q8WVY7 318 aaPredicted RBP15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 SMPDL3AQ92484 453 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 CCDC138Q96M89 665 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 ACAT2Q9BWD1 397 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 TRIM54Q9BYV2 358 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 DERL2Q9GZP9 239 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 EPB41L4BQ9H329 900 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 FBXO8Q9NRD0 319 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 SNX15Q9NRS6 342 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 ABCF3Q9NUQ8 709 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 ARL15Q9NXU5 204 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 FOXJ2Q9P0K8 574 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 CTNNAL1Q9UBT7 734 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 BTRCQ9Y297 605 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 PCDHGA7Q9Y5G6 932 aa15.33■□□□□ 0.05
CCDC28A-201ENST00000332797 IGF2RP11717 2491 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 A0A1W2PPV9 198 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 POLR1CO15160 346 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 NVLO15381 856 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 PRICKLE3O43900 615 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 ENO2P09104 434 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 SLC35E2BP0CK96 405 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 RPA3P35244 121 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 GMPRP36959 345 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 SERPINB8P50452 374 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 SERPINB9P50453 376 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 TUBB3Q13509 450 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 TSNQ15631 228 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 GPR19Q15760 415 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 WDR93Q6P2C0 686 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 SBSNQ6UWP8 590 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 CEACAM20Q6UY09 585 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 DCAKDQ8WVC6 231 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 ANKRD7Q92527 254 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 MIPEPQ99797 713 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 DDA1Q9BW61 102 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 PDE7BQ9NP56 450 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 UTP6Q9NYH9 597 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 STOX2Q9P2F5 926 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 NOVA2Q9UNW9 492 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 KLHL20Q9Y2M5 609 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 PCDHB11Q9Y5F2 797 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 B3GALT1Q9Y5Z6 326 aa15.33■□□□□ 0.04
CCDC28A-201ENST00000332797 E7ENX8 843 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 TLX3O43711 291 aaPredicted RBP15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 KRT38O76015 456 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 GUCA1CO95843 209 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 CD1DP15813 335 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 MAGP20916 626 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 AP1S2P56377 157 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 PCBP4P57723 403 aaKnown RBP15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 ACY1Q03154 408 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 TAP2Q03519 686 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 CSHL1Q14406 222 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 PPP1R3AQ16821 1122 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 CYB5D1Q6P9G0 228 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 FRA10AC1Q70Z53 315 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 ADAMTSL2Q86TH1 951 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 TBC1D1Q86TI0 1168 aaPredicted RBP15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 FGF11Q92914 225 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 ASPSCR1Q9BZE9 553 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 FGF21Q9NSA1 209 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 TAC3Q9UHF0 121 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 ZNF180Q9UJW8 692 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 PCDHGA3Q9Y5H0 932 aa15.32■□□□□ 0.04
CCDC28A-201ENST00000332797 ALDOAP04075 364 aaKnown RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 GCAP28676 217 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 TYK2P29597 1187 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 ATP6V0D1P61421 351 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 TBPL1P62380 186 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 ZIC1Q15915 447 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 TAF1BQ53T94 588 aaPredicted RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 THEMIS2Q5TEJ8 643 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 KIAA1614Q5VZ46 1190 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 AGTRAPQ6RW13 159 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 CDHR3Q6ZTQ4 885 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 385.9 ms