RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MSH3P20585 1137 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 ZC3H12BQ5HYM0 836 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF551Q7Z340 670 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 FAM217AQ8IXS0 508 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 OR56A4Q8NGH8 313 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 PGAP3Q96FM1 320 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 INPP5KQ9BT40 448 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF717Q9BY31 904 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 B3GNT4Q9C0J1 378 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 IQCF5A8MTL0 148 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 CAPN5O15484 640 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 AKR7A2O43488 359 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 NIPSNAP2O75323 286 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 PEX11BO96011 259 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 F9P00740 461 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 FHP07954 510 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 TNFSF8P32971 234 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 AFF1P51825 1210 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 VLDLRP98155 873 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 CACNB2Q08289 660 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 RFX4Q33E94 735 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 YIF1BQ5BJH7 314 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC46A3Q7Z3Q1 461 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SIMC1Q8NDZ2 872 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SNAPC3Q92966 411 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 MTFMTQ96DP5 389 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 FAM120BQ96EK7 910 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SIGLEC11Q96RL6 698 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 NXF2Q9GZY0 626 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 ARNT2Q9HBZ2 717 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 ATP13A1Q9HD20 1204 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 HEBP1Q9NRV9 189 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 KRT84Q9NSB2 600 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 KIF17Q9P2E2 1029 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 DNMT3LQ9UJW3 386 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 KLHL20Q9Y2M5 609 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 DNMT3AQ9Y6K1 912 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 DICER1Q9UPY3 1922 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 C19orf81C9J6K1 198 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 AREL1O15033 823 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 KIAA0513O60268 411 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 SCELO95171 688 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 RPLP0P05388 317 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 GJA5P36382 358 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 CXCR4P61073 352 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 STARD3Q14849 445 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 MARCH8Q5T0T0 291 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ARTNQ5T4W7 220 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 PAMR1Q6UXH9 720 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 NOXA1Q86UR1 476 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 OR4F6Q8NGB9 312 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 PSMG2Q969U7 264 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 HMCESQ96FZ2 354 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 CEP19Q96LK0 163 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 NUSAP1Q9BXS6 441 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC6A14Q9UN76 642 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 MEIS3P2A8K0S8 358 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 HHLA1C9JL84 531 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 GPR39O43194 453 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 SEC22BO75396 215 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ATXN1LP0C7T5 689 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 GLULP15104 373 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ENPP1P22413 925 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 DDOSTP39656 456 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 UGT2B15P54855 530 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 PTPRRQ15256 657 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 PARP15Q460N3 678 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 TRIM60Q495X7 471 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 RUNDC3AQ59EK9 446 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ARMCX4Q5H9R4 360 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ARMC4Q5T2S8 1044 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 OR2T5Q6IEZ7 315 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 RAB43Q86YS6 212 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 P3H2Q8IVL5 708 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 OR2T29Q8NH02 315 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 OR4L1Q8NH43 312 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF675Q8TD23 568 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 UBASH3BQ8TF42 649 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 OR52E6Q96RD3 313 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ANKHQ9HCJ1 492 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 RAD18Q9NS91 495 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 CATSPERZQ9NTU4 200 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 LYVE1Q9Y5Y7 322 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 ACTL7AQ9Y615 435 aa13.12□□□□□ -0.31
CCDC88C-201ENST00000331194 PGRP06401 933 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 ADRA2AP08913 450 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 EFNA1P20827 205 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 CDKN2CP42773 168 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 RAD51Q06609 339 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 KEAP1Q14145 624 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 DCAF4L1Q3SXM0 396 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 KIAA1614Q5VZ46 1190 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TWF2Q6IBS0 349 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SYCE2Q6PIF2 218 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SNX20Q7Z614 316 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 CCDC190Q86UF4 302 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 C12orf4Q9NQ89 552 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 MAT2BQ9NZL9 334 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 DERAQ9Y315 318 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SAMHD1Q9Y3Z3 626 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms