RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IL4RP24394 825 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 HOXD12P35452 270 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 MAP2K4P45985 399 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 PLA2G16P53816 162 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 GNG2P59768 71 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 ARHGAP1Q07960 439 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 LRP8Q14114 963 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 SEMA3AQ14563 771 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 SUZ12Q15022 739 aaKnown RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 DUOXA1Q1HG43 343 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 WSCD2Q2TBF2 565 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 KLHL6Q8WZ60 621 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 MAPKAP1Q9BPZ7 522 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 TMEM138Q9NPI0 162 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 PAK6Q9NQU5 681 aaPredicted RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 AGPAT4Q9NRZ5 378 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 PFDN2Q9UHV9 154 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 ZFP37Q9Y6Q3 630 aaPredicted RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 BCAS1O75363 584 aaPredicted RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 SLC2A2P11168 524 aaPredicted RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 WEE1P30291 646 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 MED27Q6P2C8 311 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 LINGO4Q6UY18 593 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 L3HYPDHQ96EM0 354 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 HSH2DQ96JZ2 352 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 FRMD6Q96NE9 622 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 POLR2J3Q9H1A7 115 aaKnown RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 NMUR1Q9HB89 426 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 CPNE3O75131 537 aaKnown RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 DIRAS1O95057 198 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 CORO1AP31146 461 aaKnown RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 CLCA4Q14CN2 919 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 ZNF697Q5TEC3 545 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 CCBE1Q6UXH8 406 aaPredicted RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 YAF2Q8IY57 180 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 OR13J1Q8NGT2 312 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 HEPHQ9BQS7 1158 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 FZD4Q9ULV1 537 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 MTAPQ13126 283 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 FBXL22Q6P050 247 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 OOSP2Q86WS3 158 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 OR10Q1Q8NGQ4 319 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 TRNT1Q96Q11 434 aaKnown RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 IQCF5A8MTL0 148 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 PIRO00625 290 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 CAPN3P20807 821 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 DUSP4Q13115 394 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 XAGE5Q8WWM1 108 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 FUBP3Q96I24 572 aaKnown RBP eCLIP18.87■□□□□ 0.61
USP48-201ENST00000308271 SLC32A1Q9H598 525 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 SDR39U1Q9NRG7 319 aaPredicted RBP18.87■□□□□ 0.61
USP48-201ENST00000308271 TVP23BQ9NYZ1 205 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 SPIN1Q9Y657 262 aaPredicted RBP18.87■□□□□ 0.61
USP48-201ENST00000308271 TRIM64CA6NLI5 447 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 S1PR4O95977 384 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 MAP2K5Q13163 448 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 SNX20Q7Z614 316 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 MRGPRX2Q96LB1 330 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 COMMD9Q9P000 198 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 TTC24A2A3L6 582 aaPredicted RBP18.87■□□□□ 0.61
USP48-201ENST00000308271 MANBAO00462 879 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 KHDRBS3O75525 346 aaKnown RBP18.87■□□□□ 0.61
USP48-201ENST00000308271 EBLN1P0CF75 366 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 INHBCP55103 352 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 SLC36A3Q495N2 470 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 LIN54Q6MZP7 749 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 ADGRG5Q8IZF4 528 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 RNF39Q9H2S5 420 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 TRPS1Q9UHF7 1281 aa18.87■□□□□ 0.61
USP48-201ENST00000308271 C7orf72A4D263 438 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 ATE1O95260 518 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 SLC6A4P31645 630 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 ZNF280AP59817 542 aaPredicted RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 LAPTM4AQ15012 233 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 SLC30A8Q8IWU4 369 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 ANKLE1Q8NAG6 615 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 PHC3Q8NDX5 983 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 KCNJ9Q92806 393 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 TRIT1Q9H3H1 467 aaKnown RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 DSN1Q9H410 356 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 PTGDR2Q9Y5Y4 395 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 ERAL1O75616 437 aaKnown RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 CD40LGP29965 261 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 CLCN4P51793 760 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 ZNF730Q6ZMV8 503 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 FAM20CQ8IXL6 584 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 RAVER1Q8IY67 606 aaKnown RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 CHCHD4Q8N4Q1 142 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 MCUBQ9NWR8 336 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 PRELID1Q9Y255 219 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 GRIP1Q9Y3R0 1128 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 PRKCGP05129 697 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 CHRM5P08912 532 aaPredicted RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 HPGDP15428 266 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 CSTF2P33240 577 aaKnown RBP eCLIP18.86■□□□□ 0.61
USP48-201ENST00000308271 SH3BP2P78314 561 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 GPR33Q49SQ1 333 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 ZFAND4Q86XD8 727 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 GJD3Q8N144 294 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 GEMIN6Q8WXD5 167 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms