RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NUFIP1Q9UHK0 495 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CCDC88CQ9P219 2028 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CDC42BPAQ5VT25 1732 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 MUSKO15146 869 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SFTPBP07988 381 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 NELFEP18615 380 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 RPIAP49247 311 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ACTR1AP61163 376 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 BAIAP2L2Q6UXY1 529 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 MSANTD3Q96H12 275 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CENPMQ9NSP4 180 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 GPRC5BQ9NZH0 403 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC7A11Q9UPY5 501 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 A0A1B0GVI7 797 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 COQ9O75208 318 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 DRD4P21917 467 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CTBP1Q13363 440 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ITPK1Q13572 414 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 OR7G2Q8NG99 324 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC22A18Q96BI1 424 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 OSER1Q9NX31 292 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 PLLPQ9Y342 182 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 LCHNA4D1U4 455 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 OR2AG2A6NM03 316 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 PDLIM1O00151 329 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CTNNB1P35222 781 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 POGLUT1Q8NBL1 392 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 OR5K1Q8NHB7 308 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SEC61A2Q9H9S3 476 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 USP42Q9H9J4 1324 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 MED14O60244 1454 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 RECQL4O94761 1208 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CDKN2CP42773 168 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 RPP30P78346 268 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 FOXO4P98177 505 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 BATFQ16520 125 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 LCN9Q8WX39 176 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 GEMIN6Q8WXD5 167 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 NR4A3Q92570 626 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ACTR6Q9GZN1 396 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 GTF2IRD1Q9UHL9 959 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 EIF1AYO14602 144 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CYP11A1P05108 521 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ICAM3P32942 547 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CAP2P40123 477 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 EIF1AXP47813 144 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 NIPA1Q7RTP0 329 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 OSTF1Q92882 214 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM125Q96AQ2 219 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ABHD16BQ9H3Z7 469 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 FBXL3Q9UKT7 428 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 TLR6Q9Y2C9 796 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 RIC1Q4ADV7 1423 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 HTR1AP08908 422 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 HTR7P34969 479 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 TVP23BQ9NYZ1 205 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CYB5BO43169 146 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF619Q8N2I2 560 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 CMKLR1Q99788 373 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 UNC93B1Q9H1C4 597 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ZFP57Q9NU63 452 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SHOXO15266 292 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 ACTL6BO94805 426 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 FAM183BPQ6ZVS7 135 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 AVL9Q8NBF6 648 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 TMED9Q9BVK6 235 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 ERVK-19Q9WJR5 959 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 PIP5K1BO14986 540 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 LPLP06858 475 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 BMP8BP34820 402 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 C1QTNF8P60827 252 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 MVKQ03426 396 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 PLP2Q04941 152 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF529Q6P280 563 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 BMP8AQ7Z5Y6 402 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 MFSD2AQ8NA29 543 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 DNAJC5Q9H3Z4 198 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 NDUFV1P49821 464 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 ERVK-21P61565 698 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 KRBOX4Q5JUW0 171 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 TCEAL7Q9BRU2 100 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 NIFKQ9BYG3 293 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRC19Q9H756 370 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 USP29Q9HBJ7 922 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 NRCAMQ92823 1304 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 CXCR6O00574 342 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 GRID2O43424 1007 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 PTGR1Q14914 329 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 ARSHQ5FYA8 562 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 SWT1Q5T5J6 900 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 TDP1Q9NUW8 608 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRN3E7EW58 273 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 PRNPP04156 253 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 CAPN3P20807 821 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRN3Q9H3W5 708 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 DQX1Q8TE96 717 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM41AQ96HV5 264 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 PCDHGA11Q9Y5H2 935 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 SNCGO76070 127 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 IGKV5-2P06315 115 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms